Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30479 | 5' | -55.3 | NC_006548.1 | + | 7766 | 0.66 | 0.643443 |
Target: 5'- cUCGcggcaGCuCAuGCGCUCGAUGUCGu -3' miRNA: 3'- cAGCuag--CG-GUuCGCGAGCUGCAGCu -5' |
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30479 | 5' | -55.3 | NC_006548.1 | + | 1474 | 0.66 | 0.597507 |
Target: 5'- --gGAUCGCCGgcaguggagugguAGCGCUCcAUGUCa- -3' miRNA: 3'- cagCUAGCGGU-------------UCGCGAGcUGCAGcu -5' |
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30479 | 5' | -55.3 | NC_006548.1 | + | 4138 | 0.67 | 0.576353 |
Target: 5'- ----cUCGUC-AGCcuGCUCGGCGUCGAu -3' miRNA: 3'- cagcuAGCGGuUCG--CGAGCUGCAGCU- -5' |
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30479 | 5' | -55.3 | NC_006548.1 | + | 2851 | 0.67 | 0.561974 |
Target: 5'- cGUCGAUCaGCgccuuggccgccugCAGGCGCUCGuCGaaggCGAu -3' miRNA: 3'- -CAGCUAG-CG--------------GUUCGCGAGCuGCa---GCU- -5' |
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30479 | 5' | -55.3 | NC_006548.1 | + | 31248 | 0.68 | 0.500322 |
Target: 5'- gGUCGGUgacccaGCCGAGCGaCUCuGCGUgGAc -3' miRNA: 3'- -CAGCUAg-----CGGUUCGC-GAGcUGCAgCU- -5' |
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30479 | 5' | -55.3 | NC_006548.1 | + | 21349 | 0.68 | 0.500322 |
Target: 5'- cUCGAccggCGCCAGGCcggaacGgaUGACGUCGAa -3' miRNA: 3'- cAGCUa---GCGGUUCG------CgaGCUGCAGCU- -5' |
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30479 | 5' | -55.3 | NC_006548.1 | + | 33956 | 0.69 | 0.429048 |
Target: 5'- --aGGUUGCgCAgcuguaccguGGCGCUCGGcCGUCGAa -3' miRNA: 3'- cagCUAGCG-GU----------UCGCGAGCU-GCAGCU- -5' |
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30479 | 5' | -55.3 | NC_006548.1 | + | 9597 | 0.69 | 0.419358 |
Target: 5'- aUCGAgcgcggcgCGCCAGGUGUccaUCGGgGUCGGg -3' miRNA: 3'- cAGCUa-------GCGGUUCGCG---AGCUgCAGCU- -5' |
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30479 | 5' | -55.3 | NC_006548.1 | + | 27267 | 0.7 | 0.409801 |
Target: 5'- cUCGGUCGCCGccUGCUgGACG-CGAg -3' miRNA: 3'- cAGCUAGCGGUucGCGAgCUGCaGCU- -5' |
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30479 | 5' | -55.3 | NC_006548.1 | + | 9203 | 0.7 | 0.372966 |
Target: 5'- cUUGAUgCGUCGAuGCGCUCGGCGUUu- -3' miRNA: 3'- cAGCUA-GCGGUU-CGCGAGCUGCAGcu -5' |
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30479 | 5' | -55.3 | NC_006548.1 | + | 12562 | 0.71 | 0.346854 |
Target: 5'- cGUCGAgcgcuucaaCGCCGGGCGCUCGGCc---- -3' miRNA: 3'- -CAGCUa--------GCGGUUCGCGAGCUGcagcu -5' |
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30479 | 5' | -55.3 | NC_006548.1 | + | 20435 | 0.71 | 0.338446 |
Target: 5'- uUCGG-CGCCuucGCGCUCGACGaaGAa -3' miRNA: 3'- cAGCUaGCGGuu-CGCGAGCUGCagCU- -5' |
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30479 | 5' | -55.3 | NC_006548.1 | + | 794 | 0.71 | 0.322077 |
Target: 5'- --aGAUCGCCAAGCagauGUUCGGCGUgGc -3' miRNA: 3'- cagCUAGCGGUUCG----CGAGCUGCAgCu -5' |
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30479 | 5' | -55.3 | NC_006548.1 | + | 37775 | 0.72 | 0.291135 |
Target: 5'- -cCGGUCGCCGgcacugugaugAGCGUguucgaugcagCGACGUCGAu -3' miRNA: 3'- caGCUAGCGGU-----------UCGCGa----------GCUGCAGCU- -5' |
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30479 | 5' | -55.3 | NC_006548.1 | + | 12636 | 0.75 | 0.190433 |
Target: 5'- aGUUGGcgGCCGAGCGCcCGGCGUUGAa -3' miRNA: 3'- -CAGCUagCGGUUCGCGaGCUGCAGCU- -5' |
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30479 | 5' | -55.3 | NC_006548.1 | + | 22736 | 0.76 | 0.16133 |
Target: 5'- cUCGAUCGCC-AGCGUggCGGCGUCc- -3' miRNA: 3'- cAGCUAGCGGuUCGCGa-GCUGCAGcu -5' |
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30479 | 5' | -55.3 | NC_006548.1 | + | 33558 | 0.82 | 0.060488 |
Target: 5'- cGUCGA-CGUCGAGCGCUUGGCGaUCGAc -3' miRNA: 3'- -CAGCUaGCGGUUCGCGAGCUGC-AGCU- -5' |
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30479 | 5' | -55.3 | NC_006548.1 | + | 8939 | 0.84 | 0.046314 |
Target: 5'- gGUCGAUgGCCAGGCGCUCGACcccgCGGu -3' miRNA: 3'- -CAGCUAgCGGUUCGCGAGCUGca--GCU- -5' |
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30479 | 5' | -55.3 | NC_006548.1 | + | 33623 | 1.08 | 0.000797 |
Target: 5'- uGUCGAUCGCCAAGCGCUCGACGUCGAc -3' miRNA: 3'- -CAGCUAGCGGUUCGCGAGCUGCAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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