Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30480 | 5' | -60.6 | NC_006548.1 | + | 28616 | 0.67 | 0.326468 |
Target: 5'- cGCCAUCaGGCGGCgaaGacaaaGCCGCUgCGCGc -3' miRNA: 3'- cCGGUAG-CCGCUGg--C-----UGGCGA-GCGCu -5' |
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30480 | 5' | -60.6 | NC_006548.1 | + | 21207 | 0.67 | 0.318752 |
Target: 5'- cGGCgGgCGGCGAUgGcGCCGCUgGCa- -3' miRNA: 3'- -CCGgUaGCCGCUGgC-UGGCGAgCGcu -5' |
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30480 | 5' | -60.6 | NC_006548.1 | + | 20809 | 0.67 | 0.318751 |
Target: 5'- cGCCAgaaggcucCGGUGAUCGAgCUGCUgGUGAg -3' miRNA: 3'- cCGGUa-------GCCGCUGGCU-GGCGAgCGCU- -5' |
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30480 | 5' | -60.6 | NC_006548.1 | + | 35194 | 0.67 | 0.311172 |
Target: 5'- aGGCCGagGGCGGCaucguugGGCCGCUgGaCGu -3' miRNA: 3'- -CCGGUagCCGCUGg------CUGGCGAgC-GCu -5' |
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30480 | 5' | -60.6 | NC_006548.1 | + | 16408 | 0.67 | 0.311172 |
Target: 5'- gGGCCAgCGGCaAUUGGCCGUagucagcCGCGAg -3' miRNA: 3'- -CCGGUaGCCGcUGGCUGGCGa------GCGCU- -5' |
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30480 | 5' | -60.6 | NC_006548.1 | + | 21452 | 0.67 | 0.300793 |
Target: 5'- aGCCGaugaugcaaguggUGGCGGCCGGCgGCagagUCGCGGc -3' miRNA: 3'- cCGGUa------------GCCGCUGGCUGgCG----AGCGCU- -5' |
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30480 | 5' | -60.6 | NC_006548.1 | + | 12251 | 0.68 | 0.296426 |
Target: 5'- aGCCGcUGGCGuGCUGAugcCCGCUCGCc- -3' miRNA: 3'- cCGGUaGCCGC-UGGCU---GGCGAGCGcu -5' |
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30480 | 5' | -60.6 | NC_006548.1 | + | 21143 | 0.68 | 0.28926 |
Target: 5'- uGCCAgCGGCGccaucGCCGcCCGCcguaUCGUGAu -3' miRNA: 3'- cCGGUaGCCGC-----UGGCuGGCG----AGCGCU- -5' |
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30480 | 5' | -60.6 | NC_006548.1 | + | 32437 | 0.68 | 0.28223 |
Target: 5'- uGCCAUCGGCGuccuCgCGAUCGaUCuGCGAc -3' miRNA: 3'- cCGGUAGCCGCu---G-GCUGGCgAG-CGCU- -5' |
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30480 | 5' | -60.6 | NC_006548.1 | + | 36257 | 0.68 | 0.275336 |
Target: 5'- aGGCuCAUCgaGGCG-CCGuACCGUgaucUCGCGGc -3' miRNA: 3'- -CCG-GUAG--CCGCuGGC-UGGCG----AGCGCU- -5' |
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30480 | 5' | -60.6 | NC_006548.1 | + | 8188 | 0.68 | 0.268577 |
Target: 5'- uGGCgCAguUCGGCGACggccucccuuaCGACCGCaucCGCGu -3' miRNA: 3'- -CCG-GU--AGCCGCUG-----------GCUGGCGa--GCGCu -5' |
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30480 | 5' | -60.6 | NC_006548.1 | + | 20442 | 0.68 | 0.268577 |
Target: 5'- cGGCCcguUCGGCG-CCuuCgCGCUCGaCGAa -3' miRNA: 3'- -CCGGu--AGCCGCuGGcuG-GCGAGC-GCU- -5' |
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30480 | 5' | -60.6 | NC_006548.1 | + | 26397 | 0.69 | 0.249105 |
Target: 5'- uGGCCAUCGaccCGGCCG-CCGaaCGCGc -3' miRNA: 3'- -CCGGUAGCc--GCUGGCuGGCgaGCGCu -5' |
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30480 | 5' | -60.6 | NC_006548.1 | + | 36636 | 0.69 | 0.249105 |
Target: 5'- cGGCCG-CGGCG-UUGAUCGCgucgaCGCGGa -3' miRNA: 3'- -CCGGUaGCCGCuGGCUGGCGa----GCGCU- -5' |
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30480 | 5' | -60.6 | NC_006548.1 | + | 27073 | 0.69 | 0.249105 |
Target: 5'- gGGCCGUCuGCuGAUCGGCgGaCUCGCcGAc -3' miRNA: 3'- -CCGGUAGcCG-CUGGCUGgC-GAGCG-CU- -5' |
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30480 | 5' | -60.6 | NC_006548.1 | + | 12202 | 0.69 | 0.224972 |
Target: 5'- gGGaCUGUCGGCG-CCGAUCGCUaCGUu- -3' miRNA: 3'- -CC-GGUAGCCGCuGGCUGGCGA-GCGcu -5' |
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30480 | 5' | -60.6 | NC_006548.1 | + | 14375 | 0.7 | 0.2082 |
Target: 5'- cGGCCAgaagcuggagCGGCGGCUGGCgGCaauUCGUGc -3' miRNA: 3'- -CCGGUa---------GCCGCUGGCUGgCG---AGCGCu -5' |
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30480 | 5' | -60.6 | NC_006548.1 | + | 33934 | 0.7 | 0.2082 |
Target: 5'- cGuCCAUCGuCGcucACCGGCCGCgCGCGAa -3' miRNA: 3'- cC-GGUAGCcGC---UGGCUGGCGaGCGCU- -5' |
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30480 | 5' | -60.6 | NC_006548.1 | + | 18042 | 0.7 | 0.197627 |
Target: 5'- cGGUCAagGGCGAgCGACCGUUC-UGGa -3' miRNA: 3'- -CCGGUagCCGCUgGCUGGCGAGcGCU- -5' |
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30480 | 5' | -60.6 | NC_006548.1 | + | 28982 | 0.71 | 0.175076 |
Target: 5'- cGCCGuacuucuucucgaucUCGGCG-CCGGCCGcCUCGaCGGu -3' miRNA: 3'- cCGGU---------------AGCCGCuGGCUGGC-GAGC-GCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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