miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30482 3' -53.6 NC_006548.1 + 1935 0.66 0.721502
Target:  5'- uGGUGca-GCCGcgCGCGcUUGCCcGCGg -3'
miRNA:   3'- -CCAUaggCGGUuaGCGC-AACGGaCGU- -5'
30482 3' -53.6 NC_006548.1 + 3413 0.66 0.710366
Target:  5'- cGGUAUCaaucugcagGUCGAUCGCGUcacCCUGUg -3'
miRNA:   3'- -CCAUAGg--------CGGUUAGCGCAac-GGACGu -5'
30482 3' -53.6 NC_006548.1 + 25149 0.66 0.710366
Target:  5'- aGGUcAUCCGCCccugGAUCG-GUgGCCgggGCGg -3'
miRNA:   3'- -CCA-UAGGCGG----UUAGCgCAaCGGa--CGU- -5'
30482 3' -53.6 NC_006548.1 + 32418 0.66 0.699147
Target:  5'- cGUcgCCGCCGuugccguUCGCGgcG-CUGCAg -3'
miRNA:   3'- cCAuaGGCGGUu------AGCGCaaCgGACGU- -5'
30482 3' -53.6 NC_006548.1 + 29473 0.66 0.687857
Target:  5'- --cGUCgGCCAgcgAUCGCugaccGCCUGCAg -3'
miRNA:   3'- ccaUAGgCGGU---UAGCGcaa--CGGACGU- -5'
30482 3' -53.6 NC_006548.1 + 29410 0.67 0.642241
Target:  5'- aGGcgGUCaGCCGAUCGCuggccgacGUUGCCgcGCAg -3'
miRNA:   3'- -CCa-UAGgCGGUUAGCG--------CAACGGa-CGU- -5'
30482 3' -53.6 NC_006548.1 + 27012 0.67 0.642241
Target:  5'- --aGUCCGCCGAUCaGCagacgGCCcGCAu -3'
miRNA:   3'- ccaUAGGCGGUUAG-CGcaa--CGGaCGU- -5'
30482 3' -53.6 NC_006548.1 + 24001 0.67 0.642241
Target:  5'- cGGUGUCCaGCCGAUCagg--GCCUuGCGu -3'
miRNA:   3'- -CCAUAGG-CGGUUAGcgcaaCGGA-CGU- -5'
30482 3' -53.6 NC_006548.1 + 22290 0.67 0.635367
Target:  5'- gGGUGUCgGCCAggcgAUCGCGguagaugaaagacGCgUGCGg -3'
miRNA:   3'- -CCAUAGgCGGU----UAGCGCaa-----------CGgACGU- -5'
30482 3' -53.6 NC_006548.1 + 15217 0.67 0.630783
Target:  5'- --cGUCCGCCGcgcUUGCcg-GCCUGCGc -3'
miRNA:   3'- ccaUAGGCGGUu--AGCGcaaCGGACGU- -5'
30482 3' -53.6 NC_006548.1 + 32068 0.68 0.595318
Target:  5'- aGUAccUCgGCCGGUCGaagcgguCGUUGCCgGCAu -3'
miRNA:   3'- cCAU--AGgCGGUUAGC-------GCAACGGaCGU- -5'
30482 3' -53.6 NC_006548.1 + 13215 0.68 0.562428
Target:  5'- gGGUGUCgGUCAGUUGCuGcUGuaCCUGCAg -3'
miRNA:   3'- -CCAUAGgCGGUUAGCG-CaAC--GGACGU- -5'
30482 3' -53.6 NC_006548.1 + 12838 0.69 0.51794
Target:  5'- aGGUG-CCGgUAggaaGUCGCGacUGCCUGCGa -3'
miRNA:   3'- -CCAUaGGCgGU----UAGCGCa-ACGGACGU- -5'
30482 3' -53.6 NC_006548.1 + 12313 0.69 0.50703
Target:  5'- cGGUA-CCGCUgagugGAUCGCcg-GCCUGUAu -3'
miRNA:   3'- -CCAUaGGCGG-----UUAGCGcaaCGGACGU- -5'
30482 3' -53.6 NC_006548.1 + 29977 0.7 0.454086
Target:  5'- uGGcUAUgCCGCCcGUCGCG-UGCC-GCAc -3'
miRNA:   3'- -CC-AUA-GGCGGuUAGCGCaACGGaCGU- -5'
30482 3' -53.6 NC_006548.1 + 34327 1.11 0.000702
Target:  5'- gGGUAUCCGCCAAUCGCGUUGCCUGCAc -3'
miRNA:   3'- -CCAUAGGCGGUUAGCGCAACGGACGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.