miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30482 5' -53.8 NC_006548.1 + 22300 0.66 0.704726
Target:  5'- -gUGCCGUUGCGgGugUCGGCcaGGcGAu -3'
miRNA:   3'- caACGGCAGUGCgUugAGCUG--CCaCU- -5'
30482 5' -53.8 NC_006548.1 + 22413 0.66 0.670998
Target:  5'- --cGCCGUCGCGgcuuaauccuCAACUgGGCGGc-- -3'
miRNA:   3'- caaCGGCAGUGC----------GUUGAgCUGCCacu -5'
30482 5' -53.8 NC_006548.1 + 14209 0.66 0.670998
Target:  5'- -aUGCCGgguuCGCAG-UCGAUGGUGu -3'
miRNA:   3'- caACGGCagu-GCGUUgAGCUGCCACu -5'
30482 5' -53.8 NC_006548.1 + 14911 0.67 0.65966
Target:  5'- --aGCU-UCAgGCGGCUCGGauCGGUGAu -3'
miRNA:   3'- caaCGGcAGUgCGUUGAGCU--GCCACU- -5'
30482 5' -53.8 NC_006548.1 + 32427 0.67 0.65739
Target:  5'- cGUUGCCGUUcgcggcgcugcaggaGCGCaucuggacuguggccGugUCGACGGaUGGa -3'
miRNA:   3'- -CAACGGCAG---------------UGCG---------------UugAGCUGCC-ACU- -5'
30482 5' -53.8 NC_006548.1 + 33738 0.67 0.614152
Target:  5'- -aUGCCGUCG-GUGucgguUUCGugGGUGAu -3'
miRNA:   3'- caACGGCAGUgCGUu----GAGCugCCACU- -5'
30482 5' -53.8 NC_006548.1 + 2263 0.68 0.591454
Target:  5'- --cGCCGcCGCGCAGC-CGACGa--- -3'
miRNA:   3'- caaCGGCaGUGCGUUGaGCUGCcacu -5'
30482 5' -53.8 NC_006548.1 + 35875 0.68 0.568904
Target:  5'- -aUGCCGgcgcgaucCGCGCGGC-CGGCGGcgUGAu -3'
miRNA:   3'- caACGGCa-------GUGCGUUGaGCUGCC--ACU- -5'
30482 5' -53.8 NC_006548.1 + 23929 0.68 0.545463
Target:  5'- uUUGuuGUCGCgguaguuGCGAaccgCGACGGUGAu -3'
miRNA:   3'- cAACggCAGUG-------CGUUga--GCUGCCACU- -5'
30482 5' -53.8 NC_006548.1 + 24765 0.69 0.535511
Target:  5'- --gGCCGgacgUugGCGACUCGAuaCGGUa- -3'
miRNA:   3'- caaCGGCa---GugCGUUGAGCU--GCCAcu -5'
30482 5' -53.8 NC_006548.1 + 24892 0.71 0.390824
Target:  5'- -aUGCCGUCcagcaggAUGUAGCgcucCGGCGGUGGu -3'
miRNA:   3'- caACGGCAG-------UGCGUUGa---GCUGCCACU- -5'
30482 5' -53.8 NC_006548.1 + 19276 0.73 0.28807
Target:  5'- -gUGCCGUCAgGCGAUaccugggccuggaaUCGACGGcGAu -3'
miRNA:   3'- caACGGCAGUgCGUUG--------------AGCUGCCaCU- -5'
30482 5' -53.8 NC_006548.1 + 34290 1.09 0.000929
Target:  5'- uGUUGCCGUCACGCAACUCGACGGUGAa -3'
miRNA:   3'- -CAACGGCAGUGCGUUGAGCUGCCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.