miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30483 5' -55.8 NC_006548.1 + 18735 0.66 0.561042
Target:  5'- -----aGC-CGcagGCCGUGCUGCUCGa -3'
miRNA:   3'- acacaaCGaGCua-CGGCGCGACGAGU- -5'
30483 5' -55.8 NC_006548.1 + 13017 0.66 0.53874
Target:  5'- -----cGC-CGAgggugacGCUGCGCUGCUCAa -3'
miRNA:   3'- acacaaCGaGCUa------CGGCGCGACGAGU- -5'
30483 5' -55.8 NC_006548.1 + 27297 0.66 0.53542
Target:  5'- --aGUUGCUgGGUGCCaucgauccgacucaGCGCUcucucGCUCGc -3'
miRNA:   3'- acaCAACGAgCUACGG--------------CGCGA-----CGAGU- -5'
30483 5' -55.8 NC_006548.1 + 27411 0.67 0.473926
Target:  5'- ----aUGCUCGGucaacUGCCGCucCUGCUCGg -3'
miRNA:   3'- acacaACGAGCU-----ACGGCGc-GACGAGU- -5'
30483 5' -55.8 NC_006548.1 + 32041 0.67 0.473926
Target:  5'- gGUGUUGC-CGAaaucguuugcUGuuCCGCGCUGCagCAa -3'
miRNA:   3'- aCACAACGaGCU----------AC--GGCGCGACGa-GU- -5'
30483 5' -55.8 NC_006548.1 + 24524 0.68 0.42304
Target:  5'- aGUGgcGgUCu-UGCCGCGCUGCa-- -3'
miRNA:   3'- aCACaaCgAGcuACGGCGCGACGagu -5'
30483 5' -55.8 NC_006548.1 + 12805 0.69 0.357622
Target:  5'- cUGUaUUGCUCGccaGUGCCGCGCgagcgGCg-- -3'
miRNA:   3'- -ACAcAACGAGC---UACGGCGCGa----CGagu -5'
30483 5' -55.8 NC_006548.1 + 23205 0.69 0.348875
Target:  5'- ----cUGCUCGAUGCCuuGCUGCg-- -3'
miRNA:   3'- acacaACGAGCUACGGcgCGACGagu -5'
30483 5' -55.8 NC_006548.1 + 38265 0.7 0.34028
Target:  5'- ----cUGCUCGAUGCauuCGCGCUGgUCc -3'
miRNA:   3'- acacaACGAGCUACG---GCGCGACgAGu -5'
30483 5' -55.8 NC_006548.1 + 37206 0.71 0.2771
Target:  5'- cGUGUcGUUCGAuugugaUGUCGUGCUGCUg- -3'
miRNA:   3'- aCACAaCGAGCU------ACGGCGCGACGAgu -5'
30483 5' -55.8 NC_006548.1 + 4257 0.72 0.242582
Target:  5'- cGUcggUGCUCGAUcGCCG-GCUGUUCAu -3'
miRNA:   3'- aCAca-ACGAGCUA-CGGCgCGACGAGU- -5'
30483 5' -55.8 NC_006548.1 + 27272 0.74 0.174233
Target:  5'- --cGUUGCUCGGUcGCCGC-CUGCUgGa -3'
miRNA:   3'- acaCAACGAGCUA-CGGCGcGACGAgU- -5'
30483 5' -55.8 NC_006548.1 + 34408 1.09 0.000464
Target:  5'- gUGUGUUGCUCGAUGCCGCGCUGCUCAa -3'
miRNA:   3'- -ACACAACGAGCUACGGCGCGACGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.