miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30484 5' -55.5 NC_006548.1 + 37295 0.66 0.596691
Target:  5'- gGCCGuuGAUCAaua---GGCCGGUGu -3'
miRNA:   3'- gCGGCuuCUAGUgcaucaCCGGCCAC- -5'
30484 5' -55.5 NC_006548.1 + 20028 0.67 0.562247
Target:  5'- gCGCCGGaucguAGGUCGCGgcGaucuccugcaggaUGGCCucGGUGa -3'
miRNA:   3'- -GCGGCU-----UCUAGUGCauC-------------ACCGG--CCAC- -5'
30484 5' -55.5 NC_006548.1 + 17619 0.67 0.541397
Target:  5'- gGCCGAGGggCugGaGGcagcucaccUGGCCGGa- -3'
miRNA:   3'- gCGGCUUCuaGugCaUC---------ACCGGCCac -5'
30484 5' -55.5 NC_006548.1 + 2049 0.67 0.530527
Target:  5'- gCGCCGcAAGcucaaggCACGUgacgaAGUGGCCaGUGa -3'
miRNA:   3'- -GCGGC-UUCua-----GUGCA-----UCACCGGcCAC- -5'
30484 5' -55.5 NC_006548.1 + 20279 0.67 0.519737
Target:  5'- uCGCCGAGGAUgACGgcGcccUGGCCa--- -3'
miRNA:   3'- -GCGGCUUCUAgUGCauC---ACCGGccac -5'
30484 5' -55.5 NC_006548.1 + 23087 0.68 0.509035
Target:  5'- aGCgGGAGcggC-CGUAGUGGCCGuGUa -3'
miRNA:   3'- gCGgCUUCua-GuGCAUCACCGGC-CAc -5'
30484 5' -55.5 NC_006548.1 + 20771 0.68 0.498426
Target:  5'- uCGCCGAAGGcCugGUcaaGGCCGGc- -3'
miRNA:   3'- -GCGGCUUCUaGugCAucaCCGGCCac -5'
30484 5' -55.5 NC_006548.1 + 22593 0.69 0.40804
Target:  5'- cCGCCGgcGGcugugCGCcgGUAGUGGuuGGUGc -3'
miRNA:   3'- -GCGGCuuCUa----GUG--CAUCACCggCCAC- -5'
30484 5' -55.5 NC_006548.1 + 33110 0.72 0.273025
Target:  5'- gGCCGGAGGUCAUGcccUcgacaacauaccggGGcUGGCCGGUGc -3'
miRNA:   3'- gCGGCUUCUAGUGC---A--------------UC-ACCGGCCAC- -5'
30484 5' -55.5 NC_006548.1 + 31454 0.74 0.228268
Target:  5'- aCGUCG-AGAUCGCGgcaGGUcaguuccGGCCGGUGa -3'
miRNA:   3'- -GCGGCuUCUAGUGCa--UCA-------CCGGCCAC- -5'
30484 5' -55.5 NC_006548.1 + 34749 1.07 0.000838
Target:  5'- uCGCCGAAGAUCACGUAGUGGCCGGUGc -3'
miRNA:   3'- -GCGGCUUCUAGUGCAUCACCGGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.