miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30486 3' -53 NC_006548.1 + 33325 0.66 0.768383
Target:  5'- cGCAGCCUGCUGUacgcCCUgCGUgGccgGCa -3'
miRNA:   3'- -CGUCGGGCGACA----GGA-GUAgCuuaUGc -5'
30486 3' -53 NC_006548.1 + 20497 0.66 0.747021
Target:  5'- uGCucGCCgCGCguccUCCUCGUCGAggACa -3'
miRNA:   3'- -CGu-CGG-GCGac--AGGAGUAGCUuaUGc -5'
30486 3' -53 NC_006548.1 + 16714 0.67 0.702889
Target:  5'- cGCAGgCCGCcGUCCUgGUCaua-GCGg -3'
miRNA:   3'- -CGUCgGGCGaCAGGAgUAGcuuaUGC- -5'
30486 3' -53 NC_006548.1 + 866 0.67 0.668961
Target:  5'- aGUuGCCCGCcgagGUCCaggUCAUCGAG-GCGc -3'
miRNA:   3'- -CGuCGGGCGa---CAGG---AGUAGCUUaUGC- -5'
30486 3' -53 NC_006548.1 + 37123 0.67 0.668961
Target:  5'- aGCAGCCCaugcGCUaugucGUCCUCcagCGggUAgGu -3'
miRNA:   3'- -CGUCGGG----CGA-----CAGGAGua-GCuuAUgC- -5'
30486 3' -53 NC_006548.1 + 27568 0.67 0.668961
Target:  5'- aGCAGCCC-CUGgaCC-CGUCGAAUuGCa -3'
miRNA:   3'- -CGUCGGGcGACa-GGaGUAGCUUA-UGc -5'
30486 3' -53 NC_006548.1 + 22553 0.68 0.646135
Target:  5'- uGCAGCCgCuuUGUCCUUGUCGu-UACu -3'
miRNA:   3'- -CGUCGG-GcgACAGGAGUAGCuuAUGc -5'
30486 3' -53 NC_006548.1 + 20356 0.68 0.61182
Target:  5'- cGCcGCCUGCgUGacuUCUUCGUCGAGcGCGa -3'
miRNA:   3'- -CGuCGGGCG-AC---AGGAGUAGCUUaUGC- -5'
30486 3' -53 NC_006548.1 + 15602 0.69 0.566376
Target:  5'- aGCAGCCCGagggcggccgaCUGUUCgcaggCGUCGAcAUugGg -3'
miRNA:   3'- -CGUCGGGC-----------GACAGGa----GUAGCU-UAugC- -5'
30486 3' -53 NC_006548.1 + 29697 0.7 0.521845
Target:  5'- gGCGGCUgGCUGUCCUCgAUCa------ -3'
miRNA:   3'- -CGUCGGgCGACAGGAG-UAGcuuaugc -5'
30486 3' -53 NC_006548.1 + 12195 0.7 0.500086
Target:  5'- gGCGGCCCGCggGaUCUCAUCGGccuuggccgACGa -3'
miRNA:   3'- -CGUCGGGCGa-CaGGAGUAGCUua-------UGC- -5'
30486 3' -53 NC_006548.1 + 36924 0.73 0.361445
Target:  5'- uCAGCacaCCGUagGUCUUCGUCGGAUACGc -3'
miRNA:   3'- cGUCG---GGCGa-CAGGAGUAGCUUAUGC- -5'
30486 3' -53 NC_006548.1 + 35804 1.12 0.000653
Target:  5'- aGCAGCCCGCUGUCCUCAUCGAAUACGg -3'
miRNA:   3'- -CGUCGGGCGACAGGAGUAGCUUAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.