Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30486 | 3' | -53 | NC_006548.1 | + | 33325 | 0.66 | 0.768383 |
Target: 5'- cGCAGCCUGCUGUacgcCCUgCGUgGccgGCa -3' miRNA: 3'- -CGUCGGGCGACA----GGA-GUAgCuuaUGc -5' |
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30486 | 3' | -53 | NC_006548.1 | + | 20497 | 0.66 | 0.747021 |
Target: 5'- uGCucGCCgCGCguccUCCUCGUCGAggACa -3' miRNA: 3'- -CGu-CGG-GCGac--AGGAGUAGCUuaUGc -5' |
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30486 | 3' | -53 | NC_006548.1 | + | 16714 | 0.67 | 0.702889 |
Target: 5'- cGCAGgCCGCcGUCCUgGUCaua-GCGg -3' miRNA: 3'- -CGUCgGGCGaCAGGAgUAGcuuaUGC- -5' |
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30486 | 3' | -53 | NC_006548.1 | + | 27568 | 0.67 | 0.668961 |
Target: 5'- aGCAGCCC-CUGgaCC-CGUCGAAUuGCa -3' miRNA: 3'- -CGUCGGGcGACa-GGaGUAGCUUA-UGc -5' |
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30486 | 3' | -53 | NC_006548.1 | + | 37123 | 0.67 | 0.668961 |
Target: 5'- aGCAGCCCaugcGCUaugucGUCCUCcagCGggUAgGu -3' miRNA: 3'- -CGUCGGG----CGA-----CAGGAGua-GCuuAUgC- -5' |
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30486 | 3' | -53 | NC_006548.1 | + | 866 | 0.67 | 0.668961 |
Target: 5'- aGUuGCCCGCcgagGUCCaggUCAUCGAG-GCGc -3' miRNA: 3'- -CGuCGGGCGa---CAGG---AGUAGCUUaUGC- -5' |
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30486 | 3' | -53 | NC_006548.1 | + | 22553 | 0.68 | 0.646135 |
Target: 5'- uGCAGCCgCuuUGUCCUUGUCGu-UACu -3' miRNA: 3'- -CGUCGG-GcgACAGGAGUAGCuuAUGc -5' |
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30486 | 3' | -53 | NC_006548.1 | + | 20356 | 0.68 | 0.61182 |
Target: 5'- cGCcGCCUGCgUGacuUCUUCGUCGAGcGCGa -3' miRNA: 3'- -CGuCGGGCG-AC---AGGAGUAGCUUaUGC- -5' |
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30486 | 3' | -53 | NC_006548.1 | + | 15602 | 0.69 | 0.566376 |
Target: 5'- aGCAGCCCGagggcggccgaCUGUUCgcaggCGUCGAcAUugGg -3' miRNA: 3'- -CGUCGGGC-----------GACAGGa----GUAGCU-UAugC- -5' |
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30486 | 3' | -53 | NC_006548.1 | + | 29697 | 0.7 | 0.521845 |
Target: 5'- gGCGGCUgGCUGUCCUCgAUCa------ -3' miRNA: 3'- -CGUCGGgCGACAGGAG-UAGcuuaugc -5' |
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30486 | 3' | -53 | NC_006548.1 | + | 12195 | 0.7 | 0.500086 |
Target: 5'- gGCGGCCCGCggGaUCUCAUCGGccuuggccgACGa -3' miRNA: 3'- -CGUCGGGCGa-CaGGAGUAGCUua-------UGC- -5' |
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30486 | 3' | -53 | NC_006548.1 | + | 36924 | 0.73 | 0.361445 |
Target: 5'- uCAGCacaCCGUagGUCUUCGUCGGAUACGc -3' miRNA: 3'- cGUCG---GGCGa-CAGGAGUAGCUUAUGC- -5' |
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30486 | 3' | -53 | NC_006548.1 | + | 35804 | 1.12 | 0.000653 |
Target: 5'- aGCAGCCCGCUGUCCUCAUCGAAUACGg -3' miRNA: 3'- -CGUCGGGCGACAGGAGUAGCUUAUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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