miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30487 3' -52.8 NC_006548.1 + 6597 0.66 0.741507
Target:  5'- gCUCUugcauggccUCGAucagcACCGUGCAGAaguUCUCGC-Ca -3'
miRNA:   3'- -GAGA---------AGCU-----UGGCACGUCU---AGGGUGcG- -5'
30487 3' -52.8 NC_006548.1 + 12120 0.67 0.719577
Target:  5'- uCUCgUCGGccaagGCCGaUG-AGAUCCCGCGg -3'
miRNA:   3'- -GAGaAGCU-----UGGC-ACgUCUAGGGUGCg -5'
30487 3' -52.8 NC_006548.1 + 36283 0.67 0.730595
Target:  5'- uCUCgcggCGGcACUGagcgaUGCAGAUCUgGCGCa -3'
miRNA:   3'- -GAGaa--GCU-UGGC-----ACGUCUAGGgUGCG- -5'
30487 3' -52.8 NC_006548.1 + 15385 0.67 0.686015
Target:  5'- uUCUUCGGAUUGccGCccucuacGAUCUCGCGCa -3'
miRNA:   3'- gAGAAGCUUGGCa-CGu------CUAGGGUGCG- -5'
30487 3' -52.8 NC_006548.1 + 29218 0.67 0.697275
Target:  5'- gUCggCGGuagACCGaUGCAGGUCuagcaguugcugCCGCGCg -3'
miRNA:   3'- gAGaaGCU---UGGC-ACGUCUAG------------GGUGCG- -5'
30487 3' -52.8 NC_006548.1 + 25540 0.7 0.549857
Target:  5'- cCUCggUCGAAUgaCGgaacgGCAGAUCCUACuGCu -3'
miRNA:   3'- -GAGa-AGCUUG--GCa----CGUCUAGGGUG-CG- -5'
30487 3' -52.8 NC_006548.1 + 18646 0.71 0.484472
Target:  5'- ----aUGAcuGCCGUGCGGGcUUCCACGCc -3'
miRNA:   3'- gagaaGCU--UGGCACGUCU-AGGGUGCG- -5'
30487 3' -52.8 NC_006548.1 + 36462 1.03 0.003177
Target:  5'- gCUCUUCGAACCGUGCAGA-CCCACGCg -3'
miRNA:   3'- -GAGAAGCUUGGCACGUCUaGGGUGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.