miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30487 5' -55.2 NC_006548.1 + 17974 0.66 0.623092
Target:  5'- gGCGCG-AGUgaucuacgagacgaAUCUGCGcaccagcuaugcGGCUGGACg -3'
miRNA:   3'- -CGCGCaUCAag------------UAGACGU------------CCGGCCUG- -5'
30487 5' -55.2 NC_006548.1 + 7654 0.66 0.620822
Target:  5'- gGCGCGUcuucuccAGUUCGagcuugguguUCUGCAGGUucuCGGu- -3'
miRNA:   3'- -CGCGCA-------UCAAGU----------AGACGUCCG---GCCug -5'
30487 5' -55.2 NC_006548.1 + 2336 0.66 0.610615
Target:  5'- aGCGCuucGUuccuGUUCGUCggcugcgcgGCGGcGCCGGAg -3'
miRNA:   3'- -CGCG---CAu---CAAGUAGa--------CGUC-CGGCCUg -5'
30487 5' -55.2 NC_006548.1 + 24024 0.66 0.599292
Target:  5'- uCGCG-AGcgC--CUGcCAGGCCGGGCg -3'
miRNA:   3'- cGCGCaUCaaGuaGAC-GUCCGGCCUG- -5'
30487 5' -55.2 NC_006548.1 + 22241 0.66 0.599292
Target:  5'- gGCGCGaaucaGGUUCGgguUCUGCcccGGCCGaGCg -3'
miRNA:   3'- -CGCGCa----UCAAGU---AGACGu--CCGGCcUG- -5'
30487 5' -55.2 NC_006548.1 + 32727 0.66 0.588
Target:  5'- aGCGCGUGcUccucgaccUCAgccUUGCAGGCUGGGg -3'
miRNA:   3'- -CGCGCAUcA--------AGUa--GACGUCCGGCCUg -5'
30487 5' -55.2 NC_006548.1 + 10391 0.66 0.57787
Target:  5'- cGCGCGUgaacaucgaGGUgacagguagcaacaaCAUagUUGCAGGCCGGGa -3'
miRNA:   3'- -CGCGCA---------UCAa--------------GUA--GACGUCCGGCCUg -5'
30487 5' -55.2 NC_006548.1 + 36397 0.66 0.576747
Target:  5'- cCGCGUGGg--AUCUGCAcGGUucgaagagCGGACg -3'
miRNA:   3'- cGCGCAUCaagUAGACGU-CCG--------GCCUG- -5'
30487 5' -55.2 NC_006548.1 + 6852 0.67 0.565542
Target:  5'- -aGaCGUGGUUCGgaUGCAGGCUGcGCa -3'
miRNA:   3'- cgC-GCAUCAAGUagACGUCCGGCcUG- -5'
30487 5' -55.2 NC_006548.1 + 32568 0.67 0.510541
Target:  5'- cCGCGUGGc-CGUUUGC--GCCGGACu -3'
miRNA:   3'- cGCGCAUCaaGUAGACGucCGGCCUG- -5'
30487 5' -55.2 NC_006548.1 + 28149 0.68 0.478621
Target:  5'- -gGCGguugAGUUCGgcCUGCAGGCCGc-- -3'
miRNA:   3'- cgCGCa---UCAAGUa-GACGUCCGGCcug -5'
30487 5' -55.2 NC_006548.1 + 18440 0.7 0.389414
Target:  5'- aGCgGCGUGG-UCuUCUGCAGGgcgccCUGGACc -3'
miRNA:   3'- -CG-CGCAUCaAGuAGACGUCC-----GGCCUG- -5'
30487 5' -55.2 NC_006548.1 + 36428 1.12 0.000339
Target:  5'- aGCGCGUAGUUCAUCUGCAGGCCGGACg -3'
miRNA:   3'- -CGCGCAUCAAGUAGACGUCCGGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.