miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30488 5' -57.3 NC_006548.1 + 1507 0.66 0.476627
Target:  5'- cGGCGcGAUGCUGACGUaaagcGG-CAGGa -3'
miRNA:   3'- uUCGCaCUGCGACUGCGa----CCaGUCCg -5'
30488 5' -57.3 NC_006548.1 + 5605 0.68 0.370106
Target:  5'- uGGCGaUGGCGUcGA-GCUGGUCuuccGGCa -3'
miRNA:   3'- uUCGC-ACUGCGaCUgCGACCAGu---CCG- -5'
30488 5' -57.3 NC_006548.1 + 13020 0.68 0.34401
Target:  5'- cGAGgGUGACGCUG-CGCUGcUCAaccuGCa -3'
miRNA:   3'- -UUCgCACUGCGACuGCGACcAGUc---CG- -5'
30488 5' -57.3 NC_006548.1 + 14667 0.71 0.240079
Target:  5'- cAGCGUGACGCUGgaGCGC--GUCAGcGUc -3'
miRNA:   3'- uUCGCACUGCGAC--UGCGacCAGUC-CG- -5'
30488 5' -57.3 NC_006548.1 + 28522 0.71 0.227576
Target:  5'- cAGCGUGACGCaguccugcucGGCGCcGGcCAGGUc -3'
miRNA:   3'- uUCGCACUGCGa---------CUGCGaCCaGUCCG- -5'
30488 5' -57.3 NC_006548.1 + 20723 0.71 0.227576
Target:  5'- cGAGC-UGGCGUUGGCGCUccuGGagcgcagcuucgUCAGGCa -3'
miRNA:   3'- -UUCGcACUGCGACUGCGA---CC------------AGUCCG- -5'
30488 5' -57.3 NC_006548.1 + 29873 0.73 0.163705
Target:  5'- cAAGCGUGguugggcuGCGCUGcAUGaCUGGUCcGGCg -3'
miRNA:   3'- -UUCGCAC--------UGCGAC-UGC-GACCAGuCCG- -5'
30488 5' -57.3 NC_006548.1 + 36543 1.08 0.00039
Target:  5'- cAAGCGUGACGCUGACGCUGGUCAGGCc -3'
miRNA:   3'- -UUCGCACUGCGACUGCGACCAGUCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.