miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30489 5' -60.8 NC_006548.1 + 21806 0.71 0.142768
Target:  5'- cGCcuGCGGCACCGGCGcgucCAGgCCGUGg -3'
miRNA:   3'- aCG--CGUCGUGGCCGUc---GUCgGGUACg -5'
30489 5' -60.8 NC_006548.1 + 7301 0.71 0.142768
Target:  5'- gGgGCAGCGCaCGGCgcuaugcaaAGCAGCCgCG-GCa -3'
miRNA:   3'- aCgCGUCGUG-GCCG---------UCGUCGG-GUaCG- -5'
30489 5' -60.8 NC_006548.1 + 28036 0.71 0.142768
Target:  5'- gGCGCGGC-CCuGCAGgaGGCCUAUGg -3'
miRNA:   3'- aCGCGUCGuGGcCGUCg-UCGGGUACg -5'
30489 5' -60.8 NC_006548.1 + 8415 0.71 0.142768
Target:  5'- aGCGuCAGCAUgCuGCAGauagcccaGGCCCAUGCg -3'
miRNA:   3'- aCGC-GUCGUG-GcCGUCg-------UCGGGUACG- -5'
30489 5' -60.8 NC_006548.1 + 32971 0.7 0.146798
Target:  5'- gUGCaGCGGCGCUGGcCGGCcGGCUCccGCu -3'
miRNA:   3'- -ACG-CGUCGUGGCC-GUCG-UCGGGuaCG- -5'
30489 5' -60.8 NC_006548.1 + 18684 0.7 0.150931
Target:  5'- cGCGCAGCACauGCAGgAuaucgcugucGCCCAcGCu -3'
miRNA:   3'- aCGCGUCGUGgcCGUCgU----------CGGGUaCG- -5'
30489 5' -60.8 NC_006548.1 + 14409 0.7 0.150931
Target:  5'- cGUGcCAGCACCgaGGCGGCcaAGCugauCCGUGCc -3'
miRNA:   3'- aCGC-GUCGUGG--CCGUCG--UCG----GGUACG- -5'
30489 5' -60.8 NC_006548.1 + 20849 0.7 0.150931
Target:  5'- gGCGCGGCAgCaGGCGGCcGGCCUugaccagGCc -3'
miRNA:   3'- aCGCGUCGUgG-CCGUCG-UCGGGua-----CG- -5'
30489 5' -60.8 NC_006548.1 + 3597 0.7 0.155169
Target:  5'- gGCGUAGCA--GGUAGCAGCCa--GCg -3'
miRNA:   3'- aCGCGUCGUggCCGUCGUCGGguaCG- -5'
30489 5' -60.8 NC_006548.1 + 33202 0.7 0.155169
Target:  5'- cGCuGCccgAGCACCGGC--CAGCCCcgGUa -3'
miRNA:   3'- aCG-CG---UCGUGGCCGucGUCGGGuaCG- -5'
30489 5' -60.8 NC_006548.1 + 20512 0.7 0.155169
Target:  5'- gGCGUcGaCGCC-GCAGCAGCCUcUGCc -3'
miRNA:   3'- aCGCGuC-GUGGcCGUCGUCGGGuACG- -5'
30489 5' -60.8 NC_006548.1 + 32850 0.7 0.156894
Target:  5'- uUGCcaGCAGCuggauguccggccacACCGGCAGC-GCCCAgauccGCc -3'
miRNA:   3'- -ACG--CGUCG---------------UGGCCGUCGuCGGGUa----CG- -5'
30489 5' -60.8 NC_006548.1 + 35014 0.7 0.159515
Target:  5'- gGCGCAGggccagcucguCACCGGUAGCcucaAGCaCCgAUGCc -3'
miRNA:   3'- aCGCGUC-----------GUGGCCGUCG----UCG-GG-UACG- -5'
30489 5' -60.8 NC_006548.1 + 33146 0.7 0.159515
Target:  5'- gGcCGguGCuCgGGCAGCGGCCCGa-- -3'
miRNA:   3'- aC-GCguCGuGgCCGUCGUCGGGUacg -5'
30489 5' -60.8 NC_006548.1 + 36655 0.7 0.16397
Target:  5'- cGCGCgAGCACCGcGguGCcGGCCgCG-GCg -3'
miRNA:   3'- aCGCG-UCGUGGC-CguCG-UCGG-GUaCG- -5'
30489 5' -60.8 NC_006548.1 + 34901 0.69 0.173218
Target:  5'- -aCGCAGUaacccgGCCGGCuGGuCAGCCCcgGUa -3'
miRNA:   3'- acGCGUCG------UGGCCG-UC-GUCGGGuaCG- -5'
30489 5' -60.8 NC_006548.1 + 14992 0.69 0.173218
Target:  5'- cGCGCGG-ACuCGGCAGCAgugcGCUCAccgGCa -3'
miRNA:   3'- aCGCGUCgUG-GCCGUCGU----CGGGUa--CG- -5'
30489 5' -60.8 NC_006548.1 + 14312 0.69 0.182431
Target:  5'- gGCGCaguucccgagccaGGCcgaaGCCGGCgAGCuGCCCAgccgUGCa -3'
miRNA:   3'- aCGCG-------------UCG----UGGCCG-UCGuCGGGU----ACG- -5'
30489 5' -60.8 NC_006548.1 + 29656 0.69 0.193116
Target:  5'- cUGCcaGCGGUGCCGGU-GCGGCagGUGCg -3'
miRNA:   3'- -ACG--CGUCGUGGCCGuCGUCGggUACG- -5'
30489 5' -60.8 NC_006548.1 + 36426 0.69 0.198394
Target:  5'- cGCGUAGUucaucugcagGCCGGaCGGCcgcauGCCCA-GCg -3'
miRNA:   3'- aCGCGUCG----------UGGCC-GUCGu----CGGGUaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.