miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30489 5' -60.8 NC_006548.1 + 12050 0.66 0.316378
Target:  5'- aGCGUgaacguccGGCGCCGaGCAuGCugGGUCgGUGCg -3'
miRNA:   3'- aCGCG--------UCGUGGC-CGU-CG--UCGGgUACG- -5'
30489 5' -60.8 NC_006548.1 + 12147 0.67 0.271998
Target:  5'- cGCGgGcCGCCGaGCAGUAucGCCgCGUGCu -3'
miRNA:   3'- aCGCgUcGUGGC-CGUCGU--CGG-GUACG- -5'
30489 5' -60.8 NC_006548.1 + 12231 0.68 0.226702
Target:  5'- aUGCGCcgcucgaaccAGCACgCGGCgauacugcucGGCGGCCC--GCg -3'
miRNA:   3'- -ACGCG----------UCGUG-GCCG----------UCGUCGGGuaCG- -5'
30489 5' -60.8 NC_006548.1 + 12284 0.66 0.286211
Target:  5'- gGCGCacagGGC-CUGGC-GCAGUUUAUGCc -3'
miRNA:   3'- aCGCG----UCGuGGCCGuCGUCGGGUACG- -5'
30489 5' -60.8 NC_006548.1 + 12833 0.67 0.251749
Target:  5'- gGCGCGGUAaguCCGGU-GUGGCUCggGCg -3'
miRNA:   3'- aCGCGUCGU---GGCCGuCGUCGGGuaCG- -5'
30489 5' -60.8 NC_006548.1 + 12866 0.77 0.046459
Target:  5'- cGCGCGGCACUGGCgAGCaauacAGCUCAggUGCc -3'
miRNA:   3'- aCGCGUCGUGGCCG-UCG-----UCGGGU--ACG- -5'
30489 5' -60.8 NC_006548.1 + 12944 0.68 0.226702
Target:  5'- aGCGCGGUGCUGuGCGGC-GCagCCGUGg -3'
miRNA:   3'- aCGCGUCGUGGC-CGUCGuCG--GGUACg -5'
30489 5' -60.8 NC_006548.1 + 13075 0.73 0.098888
Target:  5'- aGCGCAGCGucacccUCGGC-GCGGCCgGUGg -3'
miRNA:   3'- aCGCGUCGU------GGCCGuCGUCGGgUACg -5'
30489 5' -60.8 NC_006548.1 + 13282 0.75 0.067962
Target:  5'- gGCGCAGCACCaGguGCcGCUCGguagGCg -3'
miRNA:   3'- aCGCGUCGUGGcCguCGuCGGGUa---CG- -5'
30489 5' -60.8 NC_006548.1 + 13427 0.73 0.096098
Target:  5'- gGCGuCAGaACCGGCGGCGGgCCAggucGCu -3'
miRNA:   3'- aCGC-GUCgUGGCCGUCGUCgGGUa---CG- -5'
30489 5' -60.8 NC_006548.1 + 13564 0.68 0.232759
Target:  5'- gGUGCcuGCGCgGGCGGCGGCaagcUGCu -3'
miRNA:   3'- aCGCGu-CGUGgCCGUCGUCGggu-ACG- -5'
30489 5' -60.8 NC_006548.1 + 13612 0.66 0.279032
Target:  5'- cGCGCAgGCACCGaggaaggucaGCAGCAGagugaUCAacUGCc -3'
miRNA:   3'- aCGCGU-CGUGGC----------CGUCGUCg----GGU--ACG- -5'
30489 5' -60.8 NC_006548.1 + 14312 0.69 0.182431
Target:  5'- gGCGCaguucccgagccaGGCcgaaGCCGGCgAGCuGCCCAgccgUGCa -3'
miRNA:   3'- aCGCG-------------UCG----UGGCCG-UCGuCGGGU----ACG- -5'
30489 5' -60.8 NC_006548.1 + 14391 0.68 0.209329
Target:  5'- cUGgGCAGCucGCCGGCuuCGGCCUG-GCu -3'
miRNA:   3'- -ACgCGUCG--UGGCCGucGUCGGGUaCG- -5'
30489 5' -60.8 NC_006548.1 + 14409 0.7 0.150931
Target:  5'- cGUGcCAGCACCgaGGCGGCcaAGCugauCCGUGCc -3'
miRNA:   3'- aCGC-GUCGUGG--CCGUCG--UCG----GGUACG- -5'
30489 5' -60.8 NC_006548.1 + 14992 0.69 0.173218
Target:  5'- cGCGCGG-ACuCGGCAGCAgugcGCUCAccgGCa -3'
miRNA:   3'- aCGCGUCgUG-GCCGUCGU----CGGGUa--CG- -5'
30489 5' -60.8 NC_006548.1 + 15153 0.66 0.276907
Target:  5'- cGCGCAG-GCCGGCAagcgcggcggacGCAuccuggacgaguucGCCC-UGCa -3'
miRNA:   3'- aCGCGUCgUGGCCGU------------CGU--------------CGGGuACG- -5'
30489 5' -60.8 NC_006548.1 + 15583 0.77 0.049273
Target:  5'- -cCGCAGaccgcuaACUGGCAGCAGCCCGaggGCg -3'
miRNA:   3'- acGCGUCg------UGGCCGUCGUCGGGUa--CG- -5'
30489 5' -60.8 NC_006548.1 + 17053 0.66 0.316378
Target:  5'- -cCGgAGCGcCCGGCuuccAGCAGCuCCGccUGCa -3'
miRNA:   3'- acGCgUCGU-GGCCG----UCGUCG-GGU--ACG- -5'
30489 5' -60.8 NC_006548.1 + 17449 0.66 0.308617
Target:  5'- gGCGuCGGCGCCguGGCcuCGGCCUggGUg -3'
miRNA:   3'- aCGC-GUCGUGG--CCGucGUCGGGuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.