miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30489 5' -60.8 NC_006548.1 + 12050 0.66 0.316378
Target:  5'- aGCGUgaacguccGGCGCCGaGCAuGCugGGUCgGUGCg -3'
miRNA:   3'- aCGCG--------UCGUGGC-CGU-CG--UCGGgUACG- -5'
30489 5' -60.8 NC_006548.1 + 36268 0.66 0.307849
Target:  5'- gGCGCcGUACCGugaucucGCGGCGGCaCUgagcgAUGCa -3'
miRNA:   3'- aCGCGuCGUGGC-------CGUCGUCG-GG-----UACG- -5'
30489 5' -60.8 NC_006548.1 + 20690 0.66 0.289122
Target:  5'- aGCGCgAGCaacuGCUGGCcacccgcgaagcacaGGUGGCCCA-GCa -3'
miRNA:   3'- aCGCG-UCG----UGGCCG---------------UCGUCGGGUaCG- -5'
30489 5' -60.8 NC_006548.1 + 12284 0.66 0.286211
Target:  5'- gGCGCacagGGC-CUGGC-GCAGUUUAUGCc -3'
miRNA:   3'- aCGCG----UCGuGGCCGuCGUCGGGUACG- -5'
30489 5' -60.8 NC_006548.1 + 1463 0.66 0.286211
Target:  5'- cGCGCcgaGGCggaucGCCGGCAGUGGagugguagcgcUCCAUGUc -3'
miRNA:   3'- aCGCG---UCG-----UGGCCGUCGUC-----------GGGUACG- -5'
30489 5' -60.8 NC_006548.1 + 6872 0.66 0.284042
Target:  5'- cUGCGCAGUucggugACCGGCucCGGCgCCAauagcugggauggaUGCa -3'
miRNA:   3'- -ACGCGUCG------UGGCCGucGUCG-GGU--------------ACG- -5'
30489 5' -60.8 NC_006548.1 + 15153 0.66 0.276907
Target:  5'- cGCGCAG-GCCGGCAagcgcggcggacGCAuccuggacgaguucGCCC-UGCa -3'
miRNA:   3'- aCGCGUCgUGGCCGU------------CGU--------------CGGGuACG- -5'
30489 5' -60.8 NC_006548.1 + 29911 0.67 0.271998
Target:  5'- cUGUGCGGCACgcgacgGGCGGCauAGCCaCAUucccGCa -3'
miRNA:   3'- -ACGCGUCGUGg-----CCGUCG--UCGG-GUA----CG- -5'
30489 5' -60.8 NC_006548.1 + 12147 0.67 0.271998
Target:  5'- cGCGgGcCGCCGaGCAGUAucGCCgCGUGCu -3'
miRNA:   3'- aCGCgUcGUGGC-CGUCGU--CGG-GUACG- -5'
30489 5' -60.8 NC_006548.1 + 20914 0.67 0.271998
Target:  5'- cUGCGCAGCuuGCUGGCcGaacuGCCCAa-- -3'
miRNA:   3'- -ACGCGUCG--UGGCCGuCgu--CGGGUacg -5'
30489 5' -60.8 NC_006548.1 + 36898 0.67 0.258357
Target:  5'- gGCGCAccGCaACCGGCugcuGCAGgCCGUc- -3'
miRNA:   3'- aCGCGU--CG-UGGCCGu---CGUCgGGUAcg -5'
30489 5' -60.8 NC_006548.1 + 9019 0.67 0.258357
Target:  5'- aGCGCGGCACCcaGGUcuucCAGUUCcgGCg -3'
miRNA:   3'- aCGCGUCGUGG--CCGuc--GUCGGGuaCG- -5'
30489 5' -60.8 NC_006548.1 + 23821 0.67 0.251749
Target:  5'- gGCGCGaC-CCGGCAGaUGGCaaaCGUGCa -3'
miRNA:   3'- aCGCGUcGuGGCCGUC-GUCGg--GUACG- -5'
30489 5' -60.8 NC_006548.1 + 12833 0.67 0.251749
Target:  5'- gGCGCGGUAaguCCGGU-GUGGCUCggGCg -3'
miRNA:   3'- aCGCGUCGU---GGCCGuCGUCGGGuaCG- -5'
30489 5' -60.8 NC_006548.1 + 38208 0.67 0.245281
Target:  5'- aGCGCGaauGCAUCGaGCAGCucGGCCgAuucuUGCg -3'
miRNA:   3'- aCGCGU---CGUGGC-CGUCG--UCGGgU----ACG- -5'
30489 5' -60.8 NC_006548.1 + 33311 0.67 0.238951
Target:  5'- aGCauGCGGCGCUGcGCAGCcugcuguacGCCC-UGCg -3'
miRNA:   3'- aCG--CGUCGUGGC-CGUCGu--------CGGGuACG- -5'
30489 5' -60.8 NC_006548.1 + 8006 0.67 0.242099
Target:  5'- cGCGCAGCGCgccggaugaugcaGGCGGC-GCUCAaauaccugucuccUGCa -3'
miRNA:   3'- aCGCGUCGUGg------------CCGUCGuCGGGU-------------ACG- -5'
30489 5' -60.8 NC_006548.1 + 34439 0.67 0.245281
Target:  5'- gGUGCcgcccacaAGgACCaGGCGGUuGCCCGUGUg -3'
miRNA:   3'- aCGCG--------UCgUGG-CCGUCGuCGGGUACG- -5'
30489 5' -60.8 NC_006548.1 + 30915 0.67 0.245281
Target:  5'- cUGCuGCccGCAUaaCGGCcGCAGCCCA-GCg -3'
miRNA:   3'- -ACG-CGu-CGUG--GCCGuCGUCGGGUaCG- -5'
30489 5' -60.8 NC_006548.1 + 838 0.67 0.271302
Target:  5'- gGCGCAGCugGCCGaGaugaGGCuGCCCuggagcuAUGCc -3'
miRNA:   3'- aCGCGUCG--UGGC-Cg---UCGuCGGG-------UACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.