miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30489 5' -60.8 NC_006548.1 + 12833 0.67 0.251749
Target:  5'- gGCGCGGUAaguCCGGU-GUGGCUCggGCg -3'
miRNA:   3'- aCGCGUCGU---GGCCGuCGUCGGGuaCG- -5'
30489 5' -60.8 NC_006548.1 + 20958 0.68 0.209329
Target:  5'- cUGCGCAGCaccucggccGCCGGCuuugugaccuGGCcgucGCCCucgGCg -3'
miRNA:   3'- -ACGCGUCG---------UGGCCG----------UCGu---CGGGua-CG- -5'
30489 5' -60.8 NC_006548.1 + 29441 0.68 0.220779
Target:  5'- cGCGCAGCAgCUGGCccagaaGGCaacugcggGGCUCAUGa -3'
miRNA:   3'- aCGCGUCGU-GGCCG------UCG--------UCGGGUACg -5'
30489 5' -60.8 NC_006548.1 + 14391 0.68 0.209329
Target:  5'- cUGgGCAGCucGCCGGCuuCGGCCUG-GCu -3'
miRNA:   3'- -ACgCGUCG--UGGCCGucGUCGGGUaCG- -5'
30489 5' -60.8 NC_006548.1 + 29181 0.68 0.217289
Target:  5'- cGCGCGGCcaguucgcugacgagACCGGCcugcugGGCGGCCUg--- -3'
miRNA:   3'- aCGCGUCG---------------UGGCCG------UCGUCGGGuacg -5'
30489 5' -60.8 NC_006548.1 + 4346 0.68 0.220779
Target:  5'- cGUGCuGaCGCCGG-AGCuGGCCCgAUGCc -3'
miRNA:   3'- aCGCGuC-GUGGCCgUCG-UCGGG-UACG- -5'
30489 5' -60.8 NC_006548.1 + 21534 0.68 0.226104
Target:  5'- aGCGCuccuucaGGCuACCGGCAGaaCGGCCgGgGCg -3'
miRNA:   3'- aCGCG-------UCG-UGGCCGUC--GUCGGgUaCG- -5'
30489 5' -60.8 NC_006548.1 + 929 0.68 0.226702
Target:  5'- aGCGCcuGgGCUGGCAaccaCAGCCCA-GCa -3'
miRNA:   3'- aCGCGu-CgUGGCCGUc---GUCGGGUaCG- -5'
30489 5' -60.8 NC_006548.1 + 12231 0.68 0.226702
Target:  5'- aUGCGCcgcucgaaccAGCACgCGGCgauacugcucGGCGGCCC--GCg -3'
miRNA:   3'- -ACGCG----------UCGUG-GCCG----------UCGUCGGGuaCG- -5'
30489 5' -60.8 NC_006548.1 + 20585 0.68 0.226702
Target:  5'- -cCGCAGCGgCGGCAGaGGCUgcUGCg -3'
miRNA:   3'- acGCGUCGUgGCCGUCgUCGGguACG- -5'
30489 5' -60.8 NC_006548.1 + 29954 0.68 0.233372
Target:  5'- cGCaCAGCGCCGGaccagucaugcagcGCAGCCCAa-- -3'
miRNA:   3'- aCGcGUCGUGGCCgu------------CGUCGGGUacg -5'
30489 5' -60.8 NC_006548.1 + 26173 0.68 0.23522
Target:  5'- cGC-CGGCACCGGCcGUAGgaagaacagugccgcCCCAccUGCg -3'
miRNA:   3'- aCGcGUCGUGGCCGuCGUC---------------GGGU--ACG- -5'
30489 5' -60.8 NC_006548.1 + 19135 0.68 0.220779
Target:  5'- aGCGCAGCGCUGGgAGauccgagcgGGCUUcUGCa -3'
miRNA:   3'- aCGCGUCGUGGCCgUCg--------UCGGGuACG- -5'
30489 5' -60.8 NC_006548.1 + 12944 0.68 0.226702
Target:  5'- aGCGCGGUGCUGuGCGGC-GCagCCGUGg -3'
miRNA:   3'- aCGCGUCGUGGC-CGUCGuCG--GGUACg -5'
30489 5' -60.8 NC_006548.1 + 13564 0.68 0.232759
Target:  5'- gGUGCcuGCGCgGGCGGCGGCaagcUGCu -3'
miRNA:   3'- aCGCGu-CGUGgCCGUCGUCGggu-ACG- -5'
30489 5' -60.8 NC_006548.1 + 34901 0.69 0.173218
Target:  5'- -aCGCAGUaacccgGCCGGCuGGuCAGCCCcgGUa -3'
miRNA:   3'- acGCGUCG------UGGCCG-UC-GUCGGGuaCG- -5'
30489 5' -60.8 NC_006548.1 + 14992 0.69 0.173218
Target:  5'- cGCGCGG-ACuCGGCAGCAgugcGCUCAccgGCa -3'
miRNA:   3'- aCGCGUCgUG-GCCGUCGU----CGGGUa--CG- -5'
30489 5' -60.8 NC_006548.1 + 36426 0.69 0.198394
Target:  5'- cGCGUAGUucaucugcagGCCGGaCGGCcgcauGCCCA-GCg -3'
miRNA:   3'- aCGCGUCG----------UGGCC-GUCGu----CGGGUaCG- -5'
30489 5' -60.8 NC_006548.1 + 14312 0.69 0.182431
Target:  5'- gGCGCaguucccgagccaGGCcgaaGCCGGCgAGCuGCCCAgccgUGCa -3'
miRNA:   3'- aCGCG-------------UCG----UGGCCG-UCGuCGGGU----ACG- -5'
30489 5' -60.8 NC_006548.1 + 29656 0.69 0.193116
Target:  5'- cUGCcaGCGGUGCCGGU-GCGGCagGUGCg -3'
miRNA:   3'- -ACG--CGUCGUGGCCGuCGUCGggUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.