miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30490 3' -55.6 NC_006548.1 + 8704 0.66 0.58949
Target:  5'- cGCGC-UGCGGGCgGGCcuggaGUCCcUGg -3'
miRNA:   3'- cCGCGaACGCUCGgUCGag---UAGGaAC- -5'
30490 3' -55.6 NC_006548.1 + 32775 0.66 0.56694
Target:  5'- gGGCGCUgccgGUGuGGCCGGa-CAUCCa-- -3'
miRNA:   3'- -CCGCGAa---CGC-UCGGUCgaGUAGGaac -5'
30490 3' -55.6 NC_006548.1 + 12866 0.66 0.56694
Target:  5'- cGCGCggcacugGCGAGCaauaCAGCUCAggugCCg-- -3'
miRNA:   3'- cCGCGaa-----CGCUCG----GUCGAGUa---GGaac -5'
30490 3' -55.6 NC_006548.1 + 12986 0.67 0.522584
Target:  5'- cGCGCUcagcGCGAGCCAGaaCGUgCUg- -3'
miRNA:   3'- cCGCGAa---CGCUCGGUCgaGUAgGAac -5'
30490 3' -55.6 NC_006548.1 + 19985 0.67 0.479631
Target:  5'- cGGCGCUcaGCGAgGCCccGCUCGUCa--- -3'
miRNA:   3'- -CCGCGAa-CGCU-CGGu-CGAGUAGgaac -5'
30490 3' -55.6 NC_006548.1 + 26947 0.69 0.399421
Target:  5'- cGGCGCgcagacGCaGAGCgAGUUCGaguUCCUUGu -3'
miRNA:   3'- -CCGCGaa----CG-CUCGgUCGAGU---AGGAAC- -5'
30490 3' -55.6 NC_006548.1 + 10166 0.69 0.398473
Target:  5'- aGCGCgaGCgcaucagGAGCC-GUUCGUCCUUGc -3'
miRNA:   3'- cCGCGaaCG-------CUCGGuCGAGUAGGAAC- -5'
30490 3' -55.6 NC_006548.1 + 33392 0.69 0.384432
Target:  5'- uGGUGCUggucgacacaguggcUGCGA-CCAGCUcCGUCCUc- -3'
miRNA:   3'- -CCGCGA---------------ACGCUcGGUCGA-GUAGGAac -5'
30490 3' -55.6 NC_006548.1 + 20388 0.7 0.336671
Target:  5'- aGGCGCcgaaCGGGCCgaccAGCUCAUCCc-- -3'
miRNA:   3'- -CCGCGaac-GCUCGG----UCGAGUAGGaac -5'
30490 3' -55.6 NC_006548.1 + 18287 0.71 0.29567
Target:  5'- gGGCcguccuuGCccaGCGAuGCCAGCUCGUCCUc- -3'
miRNA:   3'- -CCG-------CGaa-CGCU-CGGUCGAGUAGGAac -5'
30490 3' -55.6 NC_006548.1 + 32977 0.71 0.274141
Target:  5'- cGGCGCUgGCcGGCCGGCUCccgCUUGu -3'
miRNA:   3'- -CCGCGAaCGcUCGGUCGAGuagGAAC- -5'
30490 3' -55.6 NC_006548.1 + 15210 0.72 0.260037
Target:  5'- cGCGCUUGCcGGCCuGCgCGUCCg-- -3'
miRNA:   3'- cCGCGAACGcUCGGuCGaGUAGGaac -5'
30490 3' -55.6 NC_006548.1 + 35015 0.72 0.24653
Target:  5'- aGGCGCa---GGGCCAGCUCGUCa--- -3'
miRNA:   3'- -CCGCGaacgCUCGGUCGAGUAGgaac -5'
30490 3' -55.6 NC_006548.1 + 23975 0.75 0.172418
Target:  5'- aGGCGCUcGCGAcuGCCAaCUCGUCCa-- -3'
miRNA:   3'- -CCGCGAaCGCU--CGGUcGAGUAGGaac -5'
30490 3' -55.6 NC_006548.1 + 278 1.11 0.000352
Target:  5'- aGGCGCUUGCGAGCCAGCUCAUCCUUGa -3'
miRNA:   3'- -CCGCGAACGCUCGGUCGAGUAGGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.