miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30491 5' -59.2 NC_006548.1 + 4653 0.67 0.33946
Target:  5'- uUGCUGCCGUgGaaaagcaccuggaguUCCgcUUCGGCcgGGCUGg -3'
miRNA:   3'- -ACGGCGGCGgU---------------AGGa-AAGCCG--UCGAC- -5'
30491 5' -59.2 NC_006548.1 + 16714 0.67 0.304373
Target:  5'- cGCagGCCGCCGUCCUggucauagCGGaAGCg- -3'
miRNA:   3'- aCGg-CGGCGGUAGGAaa------GCCgUCGac -5'
30491 5' -59.2 NC_006548.1 + 33704 0.68 0.282088
Target:  5'- cGCUGUCGCUGUCCUgcCGGCAa--- -3'
miRNA:   3'- aCGGCGGCGGUAGGAaaGCCGUcgac -5'
30491 5' -59.2 NC_006548.1 + 29744 0.68 0.282088
Target:  5'- aGCCaGCCGCCA-CUac-CGGCAGCc- -3'
miRNA:   3'- aCGG-CGGCGGUaGGaaaGCCGUCGac -5'
30491 5' -59.2 NC_006548.1 + 22614 0.68 0.261116
Target:  5'- gGCCGUCGaUCAggcucUCCUccgcCGGCGGCUGu -3'
miRNA:   3'- aCGGCGGC-GGU-----AGGAaa--GCCGUCGAC- -5'
30491 5' -59.2 NC_006548.1 + 27291 0.69 0.247852
Target:  5'- gGCUGCCGCC------UCGGCAGCg- -3'
miRNA:   3'- aCGGCGGCGGuaggaaAGCCGUCGac -5'
30491 5' -59.2 NC_006548.1 + 19396 0.71 0.179636
Target:  5'- aGCuCGCUGCCGUCCagcUGGUAGCg- -3'
miRNA:   3'- aCG-GCGGCGGUAGGaaaGCCGUCGac -5'
30491 5' -59.2 NC_006548.1 + 37408 0.67 0.336152
Target:  5'- gGCCugGCCGCUAg----UCGGCAGCg- -3'
miRNA:   3'- aCGG--CGGCGGUaggaaAGCCGUCGac -5'
30491 5' -59.2 NC_006548.1 + 21014 0.66 0.391871
Target:  5'- cGCCGUCGCCGgauuucucggaaaagUCCaccugUUUgGGCAGUUc -3'
miRNA:   3'- aCGGCGGCGGU---------------AGG-----AAAgCCGUCGAc -5'
30491 5' -59.2 NC_006548.1 + 2439 0.66 0.385491
Target:  5'- aGCCGgcucggauggaaaaCCGCCggCCUggCGGguGCg- -3'
miRNA:   3'- aCGGC--------------GGCGGuaGGAaaGCCguCGac -5'
30491 5' -59.2 NC_006548.1 + 36272 0.67 0.344466
Target:  5'- gUGCgGUCGggcgggGUCCagUUCGGCGGCUGg -3'
miRNA:   3'- -ACGgCGGCgg----UAGGa-AAGCCGUCGAC- -5'
30491 5' -59.2 NC_006548.1 + 20337 0.66 0.37918
Target:  5'- gGgCGCCGUCAUCC--UCGGCgaAGUUc -3'
miRNA:   3'- aCgGCGGCGGUAGGaaAGCCG--UCGAc -5'
30491 5' -59.2 NC_006548.1 + 29681 0.67 0.319967
Target:  5'- nGCgGCUGCCGguag--UGGCGGCUGg -3'
miRNA:   3'- aCGgCGGCGGUaggaaaGCCGUCGAC- -5'
30491 5' -59.2 NC_006548.1 + 18521 0.74 0.108431
Target:  5'- cGUgGCCGCCggGUCCaugUCGGCAcGCUGu -3'
miRNA:   3'- aCGgCGGCGG--UAGGaa-AGCCGU-CGAC- -5'
30491 5' -59.2 NC_006548.1 + 18396 0.71 0.174774
Target:  5'- cGCCGCUGCCAcCCgaacCGGCuGCg- -3'
miRNA:   3'- aCGGCGGCGGUaGGaaa-GCCGuCGac -5'
30491 5' -59.2 NC_006548.1 + 35875 0.71 0.184617
Target:  5'- aUGCCGgCGCgAUCCgcgcggcCGGCGGCg- -3'
miRNA:   3'- -ACGGCgGCGgUAGGaaa----GCCGUCGac -5'
30491 5' -59.2 NC_006548.1 + 25291 0.69 0.223
Target:  5'- uUGCCGCCcaCCAUUCgcuggUCGcGCAGCUc -3'
miRNA:   3'- -ACGGCGGc-GGUAGGaa---AGC-CGUCGAc -5'
30491 5' -59.2 NC_006548.1 + 8197 0.66 0.388217
Target:  5'- aGCgG-CGCUAUCCagUUcCGGCAGCUc -3'
miRNA:   3'- aCGgCgGCGGUAGGa-AA-GCCGUCGAc -5'
30491 5' -59.2 NC_006548.1 + 24990 0.66 0.37918
Target:  5'- cGCCGCCgacGCCAaCCUa--GGUGGCUu -3'
miRNA:   3'- aCGGCGG---CGGUaGGAaagCCGUCGAc -5'
30491 5' -59.2 NC_006548.1 + 21461 0.66 0.370285
Target:  5'- cGCC-CCgGCCGUUCUgcCGGUAGcCUGa -3'
miRNA:   3'- aCGGcGG-CGGUAGGAaaGCCGUC-GAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.