miRNA display CGI


Results 21 - 40 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30492 5' -57.2 NC_006548.1 + 29227 0.66 0.505682
Target:  5'- cUCUaCCUGgUCGGCGguagaccgaUGCAGgucuagcaguUGCUGCCg -3'
miRNA:   3'- -AGA-GGACgAGCUGC---------ACGUU----------GCGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 29429 0.66 0.509895
Target:  5'- cCUCCUGCagcgacagggugccaUCGGCGagaccgcGCAGCGCauccugcaUGCCa -3'
miRNA:   3'- aGAGGACG---------------AGCUGCa------CGUUGCG--------GCGG- -5'
30492 5' -57.2 NC_006548.1 + 21654 0.66 0.516243
Target:  5'- aCUCCUGCUUGcCGacagGUAcGCGCgGCa -3'
miRNA:   3'- aGAGGACGAGCuGCa---CGU-UGCGgCGg -5'
30492 5' -57.2 NC_006548.1 + 28157 0.66 0.516243
Target:  5'- -gUUCUGCaggcgguugaguUCGGCcUGCAG-GCCGCCa -3'
miRNA:   3'- agAGGACG------------AGCUGcACGUUgCGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 22674 0.66 0.516243
Target:  5'- cUUCCggcaGUUCGGCGaGCGgaacgauaGCGCCGUCc -3'
miRNA:   3'- aGAGGa---CGAGCUGCaCGU--------UGCGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 35962 0.66 0.526891
Target:  5'- aCUCCU--UCGuCGUcGUuaucACGCCGCCg -3'
miRNA:   3'- aGAGGAcgAGCuGCA-CGu---UGCGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 13737 0.66 0.526891
Target:  5'- --gCCUGCUCGAUG-GCGuccaGCCGgUa -3'
miRNA:   3'- agaGGACGAGCUGCaCGUug--CGGCgG- -5'
30492 5' -57.2 NC_006548.1 + 11751 0.67 0.464431
Target:  5'- -gUCaUGCgCGGCGcGCGGCGgCGCCg -3'
miRNA:   3'- agAGgACGaGCUGCaCGUUGCgGCGG- -5'
30492 5' -57.2 NC_006548.1 + 4135 0.67 0.464431
Target:  5'- gUCagCCUGCUCGGCGU-CGAUGUgGgCu -3'
miRNA:   3'- -AGa-GGACGAGCUGCAcGUUGCGgCgG- -5'
30492 5' -57.2 NC_006548.1 + 16990 0.67 0.464431
Target:  5'- --gUCUGUaUGGCaUGCAGgGCCGCCa -3'
miRNA:   3'- agaGGACGaGCUGcACGUUgCGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 2328 0.74 0.161134
Target:  5'- gUUCCUGUUCGuCGgcugcGCGGCGgCGCCg -3'
miRNA:   3'- aGAGGACGAGCuGCa----CGUUGCgGCGG- -5'
30492 5' -57.2 NC_006548.1 + 14728 0.72 0.22907
Target:  5'- cCUUCUGCUCaGCGaGCAGCGCCugGCg -3'
miRNA:   3'- aGAGGACGAGcUGCaCGUUGCGG--CGg -5'
30492 5' -57.2 NC_006548.1 + 18962 0.72 0.235193
Target:  5'- uUUUCCUGcCUUGACGUccuugGCcACGuCCGCCc -3'
miRNA:   3'- -AGAGGAC-GAGCUGCA-----CGuUGC-GGCGG- -5'
30492 5' -57.2 NC_006548.1 + 27321 0.71 0.247852
Target:  5'- -aUCCUGCUUGGCuGUuucaGCAGCagccuuggcuGCCGCCu -3'
miRNA:   3'- agAGGACGAGCUG-CA----CGUUG----------CGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 27394 0.69 0.335806
Target:  5'- gCUCCUGCUCGGCcagGCGagcgagagaGCGCUgaGUCg -3'
miRNA:   3'- aGAGGACGAGCUGca-CGU---------UGCGG--CGG- -5'
30492 5' -57.2 NC_006548.1 + 32490 0.69 0.352508
Target:  5'- gCUCCUGCagCGccgcgaacggcaACGgcgGCGACGgCUGCCg -3'
miRNA:   3'- aGAGGACGa-GC------------UGCa--CGUUGC-GGCGG- -5'
30492 5' -57.2 NC_006548.1 + 27877 0.69 0.352508
Target:  5'- gUUUCCUGgCgggUGAgGUGCAGCGCaguggugGCCg -3'
miRNA:   3'- -AGAGGAC-Ga--GCUgCACGUUGCGg------CGG- -5'
30492 5' -57.2 NC_006548.1 + 9562 0.67 0.433702
Target:  5'- cCUCCUGCUgGugGaccgaaccguUGCAucaccagGCGCCgaacGCCu -3'
miRNA:   3'- aGAGGACGAgCugC----------ACGU-------UGCGG----CGG- -5'
30492 5' -57.2 NC_006548.1 + 16545 0.67 0.464431
Target:  5'- gCUgCUGCUCcAgGUGCucUGCCGCa -3'
miRNA:   3'- aGAgGACGAGcUgCACGuuGCGGCGg -5'
30492 5' -57.2 NC_006548.1 + 22158 0.67 0.464431
Target:  5'- gCUCCUGCaggaaggccaUCGGCaccaUGCccuCGUCGCCg -3'
miRNA:   3'- aGAGGACG----------AGCUGc---ACGuu-GCGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.