Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30492 | 5' | -57.2 | NC_006548.1 | + | 16545 | 0.67 | 0.464431 |
Target: 5'- gCUgCUGCUCcAgGUGCucUGCCGCa -3' miRNA: 3'- aGAgGACGAGcUgCACGuuGCGGCGg -5' |
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30492 | 5' | -57.2 | NC_006548.1 | + | 33296 | 0.67 | 0.454392 |
Target: 5'- cCUCCgGCcgCGAgGagcaUGCGGCGCUGCg -3' miRNA: 3'- aGAGGaCGa-GCUgC----ACGUUGCGGCGg -5' |
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30492 | 5' | -57.2 | NC_006548.1 | + | 29260 | 0.67 | 0.444472 |
Target: 5'- aUCUCCgccagcaGCUCGACaauacccgGCug-GCCGCCg -3' miRNA: 3'- -AGAGGa------CGAGCUGca------CGuugCGGCGG- -5' |
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30492 | 5' | -57.2 | NC_006548.1 | + | 9562 | 0.67 | 0.433702 |
Target: 5'- cCUCCUGCUgGugGaccgaaccguUGCAucaccagGCGCCgaacGCCu -3' miRNA: 3'- aGAGGACGAgCugC----------ACGU-------UGCGG----CGG- -5' |
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30492 | 5' | -57.2 | NC_006548.1 | + | 3442 | 0.68 | 0.415463 |
Target: 5'- --cCCUGUgCGAgGaGCAGCGCCGUg -3' miRNA: 3'- agaGGACGaGCUgCaCGUUGCGGCGg -5' |
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30492 | 5' | -57.2 | NC_006548.1 | + | 30671 | 0.68 | 0.39678 |
Target: 5'- gCUCCUaccGUggCGACGuUGCAAC-CCGCUg -3' miRNA: 3'- aGAGGA---CGa-GCUGC-ACGUUGcGGCGG- -5' |
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30492 | 5' | -57.2 | NC_006548.1 | + | 10225 | 0.69 | 0.368912 |
Target: 5'- gCUCUUGCUgGAgGUcuaccgcGCGAUgaguGCCGCCa -3' miRNA: 3'- aGAGGACGAgCUgCA-------CGUUG----CGGCGG- -5' |
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30492 | 5' | -57.2 | NC_006548.1 | + | 27877 | 0.69 | 0.352508 |
Target: 5'- gUUUCCUGgCgggUGAgGUGCAGCGCaguggugGCCg -3' miRNA: 3'- -AGAGGAC-Ga--GCUgCACGUUGCGg------CGG- -5' |
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30492 | 5' | -57.2 | NC_006548.1 | + | 32490 | 0.69 | 0.352508 |
Target: 5'- gCUCCUGCagCGccgcgaacggcaACGgcgGCGACGgCUGCCg -3' miRNA: 3'- aGAGGACGa-GC------------UGCa--CGUUGC-GGCGG- -5' |
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30492 | 5' | -57.2 | NC_006548.1 | + | 27394 | 0.69 | 0.335806 |
Target: 5'- gCUCCUGCUCGGCcagGCGagcgagagaGCGCUgaGUCg -3' miRNA: 3'- aGAGGACGAGCUGca-CGU---------UGCGG--CGG- -5' |
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30492 | 5' | -57.2 | NC_006548.1 | + | 36566 | 0.69 | 0.327674 |
Target: 5'- aUCUUCcGCgUCGACGcgauCAACGCCGCg -3' miRNA: 3'- -AGAGGaCG-AGCUGCac--GUUGCGGCGg -5' |
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30492 | 5' | -57.2 | NC_006548.1 | + | 35709 | 0.69 | 0.327674 |
Target: 5'- -aUCCgugacGaCUaCGACGUcGCGACGCUGCCc -3' miRNA: 3'- agAGGa----C-GA-GCUGCA-CGUUGCGGCGG- -5' |
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30492 | 5' | -57.2 | NC_006548.1 | + | 27321 | 0.71 | 0.247852 |
Target: 5'- -aUCCUGCUUGGCuGUuucaGCAGCagccuuggcuGCCGCCu -3' miRNA: 3'- agAGGACGAGCUG-CA----CGUUG----------CGGCGG- -5' |
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30492 | 5' | -57.2 | NC_006548.1 | + | 28534 | 0.72 | 0.241453 |
Target: 5'- -gUCCUGCUCGGCGccgGCcAgGUCGCg -3' miRNA: 3'- agAGGACGAGCUGCa--CGuUgCGGCGg -5' |
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30492 | 5' | -57.2 | NC_006548.1 | + | 18962 | 0.72 | 0.235193 |
Target: 5'- uUUUCCUGcCUUGACGUccuugGCcACGuCCGCCc -3' miRNA: 3'- -AGAGGAC-GAGCUGCA-----CGuUGC-GGCGG- -5' |
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30492 | 5' | -57.2 | NC_006548.1 | + | 14728 | 0.72 | 0.22907 |
Target: 5'- cCUUCUGCUCaGCGaGCAGCGCCugGCg -3' miRNA: 3'- aGAGGACGAGcUGCaCGUUGCGG--CGg -5' |
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30492 | 5' | -57.2 | NC_006548.1 | + | 2328 | 0.74 | 0.161134 |
Target: 5'- gUUCCUGUUCGuCGgcugcGCGGCGgCGCCg -3' miRNA: 3'- aGAGGACGAGCuGCa----CGUUGCgGCGG- -5' |
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30492 | 5' | -57.2 | NC_006548.1 | + | 23694 | 0.74 | 0.152453 |
Target: 5'- gCUCaaGCaCGugG-GCGGCGCCGCCg -3' miRNA: 3'- aGAGgaCGaGCugCaCGUUGCGGCGG- -5' |
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30492 | 5' | -57.2 | NC_006548.1 | + | 21988 | 0.75 | 0.140226 |
Target: 5'- -aUCCUGCgcccgaacaUCGGCGUGCuGgGCCGUCg -3' miRNA: 3'- agAGGACG---------AGCUGCACGuUgCGGCGG- -5' |
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30492 | 5' | -57.2 | NC_006548.1 | + | 31510 | 0.75 | 0.139835 |
Target: 5'- --aCCUGCcgcgaucUCGACGUGCAggugcagauAgGCCGCCg -3' miRNA: 3'- agaGGACG-------AGCUGCACGU---------UgCGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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