miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30493 3' -58.6 NC_006548.1 + 8674 0.66 0.460787
Target:  5'- gUCUUGUCUCGGUCuuGGCUGCcggcauggaaaGCCagGAg -3'
miRNA:   3'- -GGAGUAGAGCCGG--UCGACG-----------CGGagCU- -5'
30493 3' -58.6 NC_006548.1 + 27795 0.66 0.459789
Target:  5'- gCgUCGcCUCGGCCAccacugcGCUGCaCCUCa- -3'
miRNA:   3'- -GgAGUaGAGCCGGU-------CGACGcGGAGcu -5'
30493 3' -58.6 NC_006548.1 + 8468 0.66 0.421778
Target:  5'- cCCUCAUCgaGGCCGGCcUG-GCCgagCGu -3'
miRNA:   3'- -GGAGUAGagCCGGUCG-ACgCGGa--GCu -5'
30493 3' -58.6 NC_006548.1 + 27039 0.66 0.421778
Target:  5'- gCUCAgCUuaCGGCCAGCuUGCucgGCCUUGu -3'
miRNA:   3'- gGAGUaGA--GCCGGUCG-ACG---CGGAGCu -5'
30493 3' -58.6 NC_006548.1 + 26379 0.66 0.41234
Target:  5'- aCCUCAccgcCUgGGCUcaaccuGUUGCGCCUgGAa -3'
miRNA:   3'- -GGAGUa---GAgCCGGu-----CGACGCGGAgCU- -5'
30493 3' -58.6 NC_006548.1 + 29501 0.67 0.40674
Target:  5'- gCCU--UCUgGGCCAGCUGCugcgcggcaacgucgGCCagCGAu -3'
miRNA:   3'- -GGAguAGAgCCGGUCGACG---------------CGGa-GCU- -5'
30493 3' -58.6 NC_006548.1 + 15467 0.67 0.403034
Target:  5'- aCUUCAUC-CgGGCgGGCUGUGCUgaCGAg -3'
miRNA:   3'- -GGAGUAGaG-CCGgUCGACGCGGa-GCU- -5'
30493 3' -58.6 NC_006548.1 + 14322 0.67 0.384825
Target:  5'- -gUCAUC-CGGCCaucGGCcagGCGCCccUCGAu -3'
miRNA:   3'- ggAGUAGaGCCGG---UCGa--CGCGG--AGCU- -5'
30493 3' -58.6 NC_006548.1 + 2010 0.67 0.375928
Target:  5'- gCUUCAUCUCGaacuugccgacGUCAGCgugGUGCUUCGc -3'
miRNA:   3'- -GGAGUAGAGC-----------CGGUCGa--CGCGGAGCu -5'
30493 3' -58.6 NC_006548.1 + 36375 0.67 0.358554
Target:  5'- gCCU-GUCUCuGGCugCAGCUGCGCCa--- -3'
miRNA:   3'- -GGAgUAGAG-CCG--GUCGACGCGGagcu -5'
30493 3' -58.6 NC_006548.1 + 18748 0.68 0.333563
Target:  5'- gCUag-CUCGGCCAGUgacaaCGCCUUGGg -3'
miRNA:   3'- gGAguaGAGCCGGUCGac---GCGGAGCU- -5'
30493 3' -58.6 NC_006548.1 + 15475 0.68 0.325522
Target:  5'- aUCUCAUCgUCGGCCGGCagcaucUGCuGCagCUUGAa -3'
miRNA:   3'- -GGAGUAG-AGCCGGUCG------ACG-CG--GAGCU- -5'
30493 3' -58.6 NC_006548.1 + 21125 0.69 0.280313
Target:  5'- aCUCAUCaUCGccaaacguGCCAGCgGCGCCaUCGc -3'
miRNA:   3'- gGAGUAG-AGC--------CGGUCGaCGCGG-AGCu -5'
30493 3' -58.6 NC_006548.1 + 24315 0.7 0.240237
Target:  5'- gCCggGUCUgGGCCGGCgaGCGCCUg-- -3'
miRNA:   3'- -GGagUAGAgCCGGUCGa-CGCGGAgcu -5'
30493 3' -58.6 NC_006548.1 + 28971 0.71 0.21626
Target:  5'- uUCUCgAUCUCGgcGCCGGC--CGCCUCGAc -3'
miRNA:   3'- -GGAG-UAGAGC--CGGUCGacGCGGAGCU- -5'
30493 3' -58.6 NC_006548.1 + 8396 0.71 0.210595
Target:  5'- uUCUCuacgCUCGGCCAgGCcG-GCCUCGAu -3'
miRNA:   3'- -GGAGua--GAGCCGGU-CGaCgCGGAGCU- -5'
30493 3' -58.6 NC_006548.1 + 17528 0.71 0.205058
Target:  5'- gCUgCAUCgcuUCGGCCAGCUgcgGCGCCaUCGc -3'
miRNA:   3'- gGA-GUAG---AGCCGGUCGA---CGCGG-AGCu -5'
30493 3' -58.6 NC_006548.1 + 22792 0.71 0.205058
Target:  5'- aCUUCAUCgcCGGCCGGCacgagcaccuucUGCGCCU-GAa -3'
miRNA:   3'- -GGAGUAGa-GCCGGUCG------------ACGCGGAgCU- -5'
30493 3' -58.6 NC_006548.1 + 32145 0.73 0.152089
Target:  5'- cCCUgGgCUCGGCCA---GCGCCUCGAc -3'
miRNA:   3'- -GGAgUaGAGCCGGUcgaCGCGGAGCU- -5'
30493 3' -58.6 NC_006548.1 + 779 1.1 0.000253
Target:  5'- gCCUCAUCUCGGCCAGCUGCGCCUCGAu -3'
miRNA:   3'- -GGAGUAGAGCCGGUCGACGCGGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.