miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30494 5' -58.3 NC_006548.1 + 15487 0.66 0.403225
Target:  5'- aUCAUGCCcuGGAucucaucgucgGCCGGCaGCAucuGCUg -3'
miRNA:   3'- -AGUGCGGu-CCU-----------CGGCCGaCGUuu-CGG- -5'
30494 5' -58.3 NC_006548.1 + 12590 0.66 0.403225
Target:  5'- cCAgGCCAGcuGGUCGGCgccggaUGCcGAGGCCa -3'
miRNA:   3'- aGUgCGGUCc-UCGGCCG------ACG-UUUCGG- -5'
30494 5' -58.3 NC_006548.1 + 29653 0.66 0.403225
Target:  5'- cCGCuGCCAGcGGuGCCGGUgcgGCAGgugcGGCUg -3'
miRNA:   3'- aGUG-CGGUC-CU-CGGCCGa--CGUU----UCGG- -5'
30494 5' -58.3 NC_006548.1 + 7312 0.67 0.393948
Target:  5'- -aGCGCCggucAGGGGCagcgcaCGGCgcuaUGCAAAGCa -3'
miRNA:   3'- agUGCGG----UCCUCG------GCCG----ACGUUUCGg -5'
30494 5' -58.3 NC_006548.1 + 20806 0.67 0.388448
Target:  5'- cCGCGCCAGaaggcuccggugaucGAGCUG-CUGguGAGUCu -3'
miRNA:   3'- aGUGCGGUC---------------CUCGGCcGACguUUCGG- -5'
30494 5' -58.3 NC_006548.1 + 36807 0.67 0.384809
Target:  5'- -aGCGCCAGGcG-CGGCcuuaUGCGccuGGCCg -3'
miRNA:   3'- agUGCGGUCCuCgGCCG----ACGUu--UCGG- -5'
30494 5' -58.3 NC_006548.1 + 24865 0.67 0.384809
Target:  5'- -gAC-CCAGGAGCCGGUgaucgucacccUGUAccGCUg -3'
miRNA:   3'- agUGcGGUCCUCGGCCG-----------ACGUuuCGG- -5'
30494 5' -58.3 NC_006548.1 + 31995 0.67 0.375813
Target:  5'- aCGCGCCAGGuGUCGGUUcCGaucgugaucGAGUCc -3'
miRNA:   3'- aGUGCGGUCCuCGGCCGAcGU---------UUCGG- -5'
30494 5' -58.3 NC_006548.1 + 33303 0.67 0.375813
Target:  5'- --cCGCgAGGAGCaugCGGCgcUGCGcAGCCu -3'
miRNA:   3'- aguGCGgUCCUCG---GCCG--ACGUuUCGG- -5'
30494 5' -58.3 NC_006548.1 + 17833 0.67 0.366959
Target:  5'- aUCGCGCCGaccuGGuGgCGGauCUGCA-AGCCa -3'
miRNA:   3'- -AGUGCGGU----CCuCgGCC--GACGUuUCGG- -5'
30494 5' -58.3 NC_006548.1 + 21445 0.67 0.366959
Target:  5'- -gAUGCaagugguGGcGGCCGGCgGCAGAGUCg -3'
miRNA:   3'- agUGCGgu-----CC-UCGGCCGaCGUUUCGG- -5'
30494 5' -58.3 NC_006548.1 + 19316 0.67 0.366959
Target:  5'- cUUGCGCCgcAGGuaGGCCGGCgacaaggGCu--GCCa -3'
miRNA:   3'- -AGUGCGG--UCC--UCGGCCGa------CGuuuCGG- -5'
30494 5' -58.3 NC_006548.1 + 29093 0.67 0.366959
Target:  5'- cUugGuCCuGGAGCU-GCUGCAGcucAGCCu -3'
miRNA:   3'- aGugC-GGuCCUCGGcCGACGUU---UCGG- -5'
30494 5' -58.3 NC_006548.1 + 26240 0.67 0.366082
Target:  5'- cUCuCGCCAGGucuucaAG-UGGCUGCAGgagacccGGCCg -3'
miRNA:   3'- -AGuGCGGUCC------UCgGCCGACGUU-------UCGG- -5'
30494 5' -58.3 NC_006548.1 + 16966 0.67 0.35825
Target:  5'- cUCAUGCCc---GCCGGCaugcagGCGGAGCUg -3'
miRNA:   3'- -AGUGCGGuccuCGGCCGa-----CGUUUCGG- -5'
30494 5' -58.3 NC_006548.1 + 22538 0.67 0.349687
Target:  5'- -gGCGCaCAGccGCCGGCggaGgAGAGCCu -3'
miRNA:   3'- agUGCG-GUCcuCGGCCGa--CgUUUCGG- -5'
30494 5' -58.3 NC_006548.1 + 27625 0.67 0.349687
Target:  5'- -gGCaGCUAcGGGGUCGGCgGCGAAGgCg -3'
miRNA:   3'- agUG-CGGU-CCUCGGCCGaCGUUUCgG- -5'
30494 5' -58.3 NC_006548.1 + 28126 0.68 0.32488
Target:  5'- --cCGCCAGccGCCuGCUGUGAGGCUg -3'
miRNA:   3'- aguGCGGUCcuCGGcCGACGUUUCGG- -5'
30494 5' -58.3 NC_006548.1 + 3303 0.68 0.309083
Target:  5'- aUCAgGCuCGGGucaUGaGCUGCAGAGCCc -3'
miRNA:   3'- -AGUgCG-GUCCucgGC-CGACGUUUCGG- -5'
30494 5' -58.3 NC_006548.1 + 4340 0.68 0.309083
Target:  5'- -gACGCC-GGAGCUGGCccgaUGCcuggauGCCg -3'
miRNA:   3'- agUGCGGuCCUCGGCCG----ACGuuu---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.