Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30494 | 5' | -58.3 | NC_006548.1 | + | 15487 | 0.66 | 0.403225 |
Target: 5'- aUCAUGCCcuGGAucucaucgucgGCCGGCaGCAucuGCUg -3' miRNA: 3'- -AGUGCGGu-CCU-----------CGGCCGaCGUuu-CGG- -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 37545 | 0.66 | 0.403225 |
Target: 5'- -gGCGCCGGcgguuGGGCUgaguGGaCUGUggGGCCa -3' miRNA: 3'- agUGCGGUC-----CUCGG----CC-GACGuuUCGG- -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 29653 | 0.66 | 0.403225 |
Target: 5'- cCGCuGCCAGcGGuGCCGGUgcgGCAGgugcGGCUg -3' miRNA: 3'- aGUG-CGGUC-CU-CGGCCGa--CGUU----UCGG- -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 7312 | 0.67 | 0.393948 |
Target: 5'- -aGCGCCggucAGGGGCagcgcaCGGCgcuaUGCAAAGCa -3' miRNA: 3'- agUGCGG----UCCUCG------GCCG----ACGUUUCGg -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 20806 | 0.67 | 0.388448 |
Target: 5'- cCGCGCCAGaaggcuccggugaucGAGCUG-CUGguGAGUCu -3' miRNA: 3'- aGUGCGGUC---------------CUCGGCcGACguUUCGG- -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 24865 | 0.67 | 0.384809 |
Target: 5'- -gAC-CCAGGAGCCGGUgaucgucacccUGUAccGCUg -3' miRNA: 3'- agUGcGGUCCUCGGCCG-----------ACGUuuCGG- -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 36807 | 0.67 | 0.384809 |
Target: 5'- -aGCGCCAGGcG-CGGCcuuaUGCGccuGGCCg -3' miRNA: 3'- agUGCGGUCCuCgGCCG----ACGUu--UCGG- -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 33303 | 0.67 | 0.375813 |
Target: 5'- --cCGCgAGGAGCaugCGGCgcUGCGcAGCCu -3' miRNA: 3'- aguGCGgUCCUCG---GCCG--ACGUuUCGG- -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 31995 | 0.67 | 0.375813 |
Target: 5'- aCGCGCCAGGuGUCGGUUcCGaucgugaucGAGUCc -3' miRNA: 3'- aGUGCGGUCCuCGGCCGAcGU---------UUCGG- -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 21445 | 0.67 | 0.366959 |
Target: 5'- -gAUGCaagugguGGcGGCCGGCgGCAGAGUCg -3' miRNA: 3'- agUGCGgu-----CC-UCGGCCGaCGUUUCGG- -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 29093 | 0.67 | 0.366959 |
Target: 5'- cUugGuCCuGGAGCU-GCUGCAGcucAGCCu -3' miRNA: 3'- aGugC-GGuCCUCGGcCGACGUU---UCGG- -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 19316 | 0.67 | 0.366959 |
Target: 5'- cUUGCGCCgcAGGuaGGCCGGCgacaaggGCu--GCCa -3' miRNA: 3'- -AGUGCGG--UCC--UCGGCCGa------CGuuuCGG- -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 17833 | 0.67 | 0.366959 |
Target: 5'- aUCGCGCCGaccuGGuGgCGGauCUGCA-AGCCa -3' miRNA: 3'- -AGUGCGGU----CCuCgGCC--GACGUuUCGG- -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 26240 | 0.67 | 0.366082 |
Target: 5'- cUCuCGCCAGGucuucaAG-UGGCUGCAGgagacccGGCCg -3' miRNA: 3'- -AGuGCGGUCC------UCgGCCGACGUU-------UCGG- -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 16966 | 0.67 | 0.35825 |
Target: 5'- cUCAUGCCc---GCCGGCaugcagGCGGAGCUg -3' miRNA: 3'- -AGUGCGGuccuCGGCCGa-----CGUUUCGG- -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 27625 | 0.67 | 0.349687 |
Target: 5'- -gGCaGCUAcGGGGUCGGCgGCGAAGgCg -3' miRNA: 3'- agUG-CGGU-CCUCGGCCGaCGUUUCgG- -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 22538 | 0.67 | 0.349687 |
Target: 5'- -gGCGCaCAGccGCCGGCggaGgAGAGCCu -3' miRNA: 3'- agUGCG-GUCcuCGGCCGa--CgUUUCGG- -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 28126 | 0.68 | 0.32488 |
Target: 5'- --cCGCCAGccGCCuGCUGUGAGGCUg -3' miRNA: 3'- aguGCGGUCcuCGGcCGACGUUUCGG- -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 4340 | 0.68 | 0.309083 |
Target: 5'- -gACGCC-GGAGCUGGCccgaUGCcuggauGCCg -3' miRNA: 3'- agUGCGGuCCUCGGCCG----ACGuuu---CGG- -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 37958 | 0.68 | 0.309083 |
Target: 5'- ---aGCUGGGuGCCGGCggugaGguAGGCCg -3' miRNA: 3'- agugCGGUCCuCGGCCGa----CguUUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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