miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30495 3' -57.8 NC_006548.1 + 9120 0.66 0.467222
Target:  5'- aAGCUGUUGC-CaCAGCgucaGCCUGaugAGGUa -3'
miRNA:   3'- -UCGACAGCGaG-GUCG----UGGACca-UCCG- -5'
30495 3' -57.8 NC_006548.1 + 24297 0.66 0.467222
Target:  5'- cGCUGUUuuccUUCCAGgGCCgGGUcuGGGCc -3'
miRNA:   3'- uCGACAGc---GAGGUCgUGGaCCA--UCCG- -5'
30495 3' -57.8 NC_006548.1 + 23327 0.66 0.457045
Target:  5'- cGGCU-UC-CUCCAGCGCCg---GGGCu -3'
miRNA:   3'- -UCGAcAGcGAGGUCGUGGaccaUCCG- -5'
30495 3' -57.8 NC_006548.1 + 17678 0.66 0.446988
Target:  5'- gAGCUG-C-CUCCAGCcccucgGCCaUGGccUGGGCg -3'
miRNA:   3'- -UCGACaGcGAGGUCG------UGG-ACC--AUCCG- -5'
30495 3' -57.8 NC_006548.1 + 5618 0.66 0.446988
Target:  5'- gAGCUgGUC-UUCCGGCacGCCUucggGGUGGGUc -3'
miRNA:   3'- -UCGA-CAGcGAGGUCG--UGGA----CCAUCCG- -5'
30495 3' -57.8 NC_006548.1 + 15971 0.66 0.437056
Target:  5'- uGUgGUC-CUCCauGGCGCCgcggauugGGUAGGCc -3'
miRNA:   3'- uCGaCAGcGAGG--UCGUGGa-------CCAUCCG- -5'
30495 3' -57.8 NC_006548.1 + 24030 0.66 0.417578
Target:  5'- uGGCaGUCGCg--AGCGCCUGccAGGCc -3'
miRNA:   3'- -UCGaCAGCGaggUCGUGGACcaUCCG- -5'
30495 3' -57.8 NC_006548.1 + 29645 0.67 0.389379
Target:  5'- uGCUGgugcCGCUgCCAGCgguGCC-GGUGcGGCa -3'
miRNA:   3'- uCGACa---GCGA-GGUCG---UGGaCCAU-CCG- -5'
30495 3' -57.8 NC_006548.1 + 5763 0.67 0.38026
Target:  5'- aAGCUGUguuccgugcCGCgUCgCGGCAUaaaGGUGGGCa -3'
miRNA:   3'- -UCGACA---------GCG-AG-GUCGUGga-CCAUCCG- -5'
30495 3' -57.8 NC_006548.1 + 14394 0.67 0.362455
Target:  5'- cGGCUGgcggcaauUCGUgCCAGCACCg---AGGCg -3'
miRNA:   3'- -UCGAC--------AGCGaGGUCGUGGaccaUCCG- -5'
30495 3' -57.8 NC_006548.1 + 944 0.68 0.345239
Target:  5'- uGCUGacugaGUUCaAGCGCCUGGgcuGGCa -3'
miRNA:   3'- uCGACag---CGAGgUCGUGGACCau-CCG- -5'
30495 3' -57.8 NC_006548.1 + 19621 0.68 0.345239
Target:  5'- cAGCgcgCGCUCCGcgaacGCGCCUGaaAGGCc -3'
miRNA:   3'- -UCGacaGCGAGGU-----CGUGGACcaUCCG- -5'
30495 3' -57.8 NC_006548.1 + 7458 0.68 0.345239
Target:  5'- gAGCUugGUCGCgaCCAgGCACCcgacugGGUGGGg -3'
miRNA:   3'- -UCGA--CAGCGa-GGU-CGUGGa-----CCAUCCg -5'
30495 3' -57.8 NC_006548.1 + 29187 0.68 0.340189
Target:  5'- uGCUGcCGCgcggCCAGUucgcugacgagaccgGCCUGcUGGGCg -3'
miRNA:   3'- uCGACaGCGa---GGUCG---------------UGGACcAUCCG- -5'
30495 3' -57.8 NC_006548.1 + 18321 0.69 0.275153
Target:  5'- cAGCcGUCGCaUCUGGCugCUcGG-AGGCu -3'
miRNA:   3'- -UCGaCAGCG-AGGUCGugGA-CCaUCCG- -5'
30495 3' -57.8 NC_006548.1 + 21268 0.7 0.241387
Target:  5'- cAGCgcagUGCUaCCGGCAgCCUGGgcGGCc -3'
miRNA:   3'- -UCGaca-GCGA-GGUCGU-GGACCauCCG- -5'
30495 3' -57.8 NC_006548.1 + 33462 0.72 0.192494
Target:  5'- gAGCUgGUCGCagcacugugucgaCCAGCACCaGGUcGGCg -3'
miRNA:   3'- -UCGA-CAGCGa------------GGUCGUGGaCCAuCCG- -5'
30495 3' -57.8 NC_006548.1 + 16547 0.73 0.167693
Target:  5'- cAGCUGcUGCUCCAGgugcucugccgcaGCCUGGUcgaucGGGCg -3'
miRNA:   3'- -UCGACaGCGAGGUCg------------UGGACCA-----UCCG- -5'
30495 3' -57.8 NC_006548.1 + 13187 0.73 0.164917
Target:  5'- cAGCaGUUGCUCCucgGCCUGGUuGGCg -3'
miRNA:   3'- -UCGaCAGCGAGGucgUGGACCAuCCG- -5'
30495 3' -57.8 NC_006548.1 + 12087 0.75 0.120886
Target:  5'- cGCUGaUGCUCCuGCugCUGGccGGCg -3'
miRNA:   3'- uCGACaGCGAGGuCGugGACCauCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.