miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30495 5' -65.6 NC_006548.1 + 14329 0.71 0.075034
Target:  5'- -aGGCcgaagCCGGCgagcuGCCcaGCCGUGCAGCCGu -3'
miRNA:   3'- agUCGa----GGCCG-----CGG--CGGCGCGUCGGC- -5'
30495 5' -65.6 NC_006548.1 + 14475 0.68 0.126079
Target:  5'- aUCAGCUuggccgccUCGGUGCUggcacgaauuGCCGC-CAGCCGc -3'
miRNA:   3'- -AGUCGA--------GGCCGCGG----------CGGCGcGUCGGC- -5'
30495 5' -65.6 NC_006548.1 + 16186 0.7 0.088534
Target:  5'- aCGGCUUCGGCGCgG-UGCGCGGUa- -3'
miRNA:   3'- aGUCGAGGCCGCGgCgGCGCGUCGgc -5'
30495 5' -65.6 NC_006548.1 + 17194 0.66 0.179782
Target:  5'- cUCGGC-CCGGCccguuggcugaccgaGuggaacuuccCCGgCGCGCAGCCGc -3'
miRNA:   3'- -AGUCGaGGCCG---------------C----------GGCgGCGCGUCGGC- -5'
30495 5' -65.6 NC_006548.1 + 17449 0.7 0.088534
Target:  5'- cCAGCagCGGCGauggCGCCGCaGCuGGCCGa -3'
miRNA:   3'- aGUCGagGCCGCg---GCGGCG-CG-UCGGC- -5'
30495 5' -65.6 NC_006548.1 + 17450 0.67 0.160217
Target:  5'- -aGGCgUCGGCGCCGUgGCcuCGGCCu -3'
miRNA:   3'- agUCGaGGCCGCGGCGgCGc-GUCGGc -5'
30495 5' -65.6 NC_006548.1 + 17513 0.73 0.050795
Target:  5'- cCAGCUgCGGCGCCaucGCCGCuGCugGGUCGa -3'
miRNA:   3'- aGUCGAgGCCGCGG---CGGCG-CG--UCGGC- -5'
30495 5' -65.6 NC_006548.1 + 18243 0.67 0.151974
Target:  5'- aCGGC-CCGGacgaGCCuCCGaGCAGCCa -3'
miRNA:   3'- aGUCGaGGCCg---CGGcGGCgCGUCGGc -5'
30495 5' -65.6 NC_006548.1 + 20218 0.72 0.061776
Target:  5'- aUCGGCUuccUCGGUGCCguGCCGC-CGGCCa -3'
miRNA:   3'- -AGUCGA---GGCCGCGG--CGGCGcGUCGGc -5'
30495 5' -65.6 NC_006548.1 + 20335 0.66 0.201954
Target:  5'- aCGGCUCUGaccgagauccuGCGCCGCCuGCGUgacuucuucgucgAGCgCGa -3'
miRNA:   3'- aGUCGAGGC-----------CGCGGCGG-CGCG-------------UCG-GC- -5'
30495 5' -65.6 NC_006548.1 + 20527 0.68 0.129511
Target:  5'- gCAGcCUCUGcCGCCGCUGCGgaagAGCCGc -3'
miRNA:   3'- aGUC-GAGGCcGCGGCGGCGCg---UCGGC- -5'
30495 5' -65.6 NC_006548.1 + 20858 0.68 0.136635
Target:  5'- -gAGCcuUCUGGCGCgGCaGCagGCGGCCGg -3'
miRNA:   3'- agUCG--AGGCCGCGgCGgCG--CGUCGGC- -5'
30495 5' -65.6 NC_006548.1 + 20882 0.66 0.181662
Target:  5'- aCGGCcaggucacaaagCCGGCgGCCgagguGCUGCGCAGCUu -3'
miRNA:   3'- aGUCGa-----------GGCCG-CGG-----CGGCGCGUCGGc -5'
30495 5' -65.6 NC_006548.1 + 21027 0.67 0.16886
Target:  5'- -aAGCUCaGGuCGCCGCCGUc--GCCGg -3'
miRNA:   3'- agUCGAGgCC-GCGGCGGCGcguCGGC- -5'
30495 5' -65.6 NC_006548.1 + 21184 0.66 0.173337
Target:  5'- gCAGCUCggaCGGCcugGCCGCCcagGCuGCCGg -3'
miRNA:   3'- aGUCGAG---GCCG---CGGCGGcg-CGuCGGC- -5'
30495 5' -65.6 NC_006548.1 + 22991 0.7 0.098516
Target:  5'- cCAGUccaccccgauagUCCGGCccaacucGCCGCCGCGCGacugaaucGCCa -3'
miRNA:   3'- aGUCG------------AGGCCG-------CGGCGGCGCGU--------CGGc -5'
30495 5' -65.6 NC_006548.1 + 23389 0.67 0.143736
Target:  5'- gUAGCcCCGGCGCUggaggaaGCCGUcgauGUAGCCu -3'
miRNA:   3'- aGUCGaGGCCGCGG-------CGGCG----CGUCGGc -5'
30495 5' -65.6 NC_006548.1 + 26404 0.68 0.126079
Target:  5'- gUAGCUCUGGCcaucgacccgGCCGCCgaacGCGCucuGCUGc -3'
miRNA:   3'- aGUCGAGGCCG----------CGGCGG----CGCGu--CGGC- -5'
30495 5' -65.6 NC_006548.1 + 27000 0.66 0.202473
Target:  5'- gCAGCgUCGGCGaguCCGCCGaucaGCAGaCGg -3'
miRNA:   3'- aGUCGaGGCCGC---GGCGGCg---CGUCgGC- -5'
30495 5' -65.6 NC_006548.1 + 27211 0.68 0.136635
Target:  5'- cCAGCaggCGGCGaCCGagcaaCGCGCuGCCGa -3'
miRNA:   3'- aGUCGag-GCCGC-GGCg----GCGCGuCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.