miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30496 5' -57.6 NC_006548.1 + 2308 0.66 0.432364
Target:  5'- cGGCGGCGCcggagcugaccggcuACgccuaccaggugcugGAGCGAcagcugcagaaGGCGCGCa -3'
miRNA:   3'- aCCGUCGUG---------------UGaa-------------CUCGCU-----------CCGCGUG- -5'
30496 5' -57.6 NC_006548.1 + 23851 0.66 0.41186
Target:  5'- aUGGcCGGCGgGCUUGGGUGAgagagucuccugGGCcagcaGCACa -3'
miRNA:   3'- -ACC-GUCGUgUGAACUCGCU------------CCG-----CGUG- -5'
30496 5' -57.6 NC_006548.1 + 12182 0.67 0.402309
Target:  5'- cGaGCGGCGCAUgcUGAGUGGGGacugucgGCGCc -3'
miRNA:   3'- aC-CGUCGUGUGa-ACUCGCUCCg------CGUG- -5'
30496 5' -57.6 NC_006548.1 + 27861 0.67 0.402309
Target:  5'- gGuGCAGCGCAgUggUGGcCGAGGCGaCGCc -3'
miRNA:   3'- aC-CGUCGUGUgA--ACUcGCUCCGC-GUG- -5'
30496 5' -57.6 NC_006548.1 + 5038 0.67 0.392901
Target:  5'- aGGCGGUGCACcaGAuCGcGGCGCAg -3'
miRNA:   3'- aCCGUCGUGUGaaCUcGCuCCGCGUg -5'
30496 5' -57.6 NC_006548.1 + 35941 0.67 0.374519
Target:  5'- cGGCgAGUugGCcggcaGGGUGGcGGCGCGCg -3'
miRNA:   3'- aCCG-UCGugUGaa---CUCGCU-CCGCGUG- -5'
30496 5' -57.6 NC_006548.1 + 14450 0.68 0.314897
Target:  5'- cGGCGacgaccuggacGCACGC---AGCGAGGCGCu- -3'
miRNA:   3'- aCCGU-----------CGUGUGaacUCGCUCCGCGug -5'
30496 5' -57.6 NC_006548.1 + 13416 0.7 0.242619
Target:  5'- cGGCGGCGgGCcaggucgcuguUUGAGCGccggcggaaucGGCGCGCg -3'
miRNA:   3'- aCCGUCGUgUG-----------AACUCGCu----------CCGCGUG- -5'
30496 5' -57.6 NC_006548.1 + 27215 0.71 0.221992
Target:  5'- aUGGCGGUggacuGCGCUUGAGCGcuaucgcgccAGGCaguguuccccgcuuGCACa -3'
miRNA:   3'- -ACCGUCG-----UGUGAACUCGC----------UCCG--------------CGUG- -5'
30496 5' -57.6 NC_006548.1 + 9578 0.71 0.221391
Target:  5'- gGGC-GCACGCgaucagugcaucGAGCGcGGCGCGCc -3'
miRNA:   3'- aCCGuCGUGUGaa----------CUCGCuCCGCGUG- -5'
30496 5' -57.6 NC_006548.1 + 19924 0.72 0.18316
Target:  5'- gUGGCGGUugGCUUuuucaugccgcccaGAGUGAGGCG-GCg -3'
miRNA:   3'- -ACCGUCGugUGAA--------------CUCGCUCCGCgUG- -5'
30496 5' -57.6 NC_006548.1 + 36288 0.73 0.151742
Target:  5'- cGGCGGCAC---UGAGCGAugcagaucuGGCGCAg -3'
miRNA:   3'- aCCGUCGUGugaACUCGCU---------CCGCGUg -5'
30496 5' -57.6 NC_006548.1 + 31729 0.78 0.06911
Target:  5'- cGGCAGC-CACUcGGGCGAGGgGC-Cg -3'
miRNA:   3'- aCCGUCGuGUGAaCUCGCUCCgCGuG- -5'
30496 5' -57.6 NC_006548.1 + 2341 1.09 0.000297
Target:  5'- aUGGCAGCACACUUGAGCGAGGCGCACc -3'
miRNA:   3'- -ACCGUCGUGUGAACUCGCUCCGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.