Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30498 | 5' | -57.1 | NC_006548.1 | + | 4198 | 1.11 | 0.000377 |
Target: 5'- aGCCGGCGAUCGAGCACCGACGUCUGAu -3' miRNA: 3'- -CGGCCGCUAGCUCGUGGCUGCAGACU- -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 22956 | 0.66 | 0.568573 |
Target: 5'- cGCCGGCcucaaggaccgcuucAUCGuGCAgCGcgaGCGUCUGGa -3' miRNA: 3'- -CGGCCGc--------------UAGCuCGUgGC---UGCAGACU- -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 5658 | 0.66 | 0.545865 |
Target: 5'- aGCCaGGCcAUCGAGU-CCGugGUCc-- -3' miRNA: 3'- -CGG-CCGcUAGCUCGuGGCugCAGacu -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 21753 | 0.66 | 0.513959 |
Target: 5'- cGCCGGUGccgcaggcggauAUCGAcaacGCACCGACGa---- -3' miRNA: 3'- -CGGCCGC------------UAGCU----CGUGGCUGCagacu -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 14395 | 0.67 | 0.493116 |
Target: 5'- gGCUGGCGGcaauUCGugccAGCACCGagGCGgccaagCUGAu -3' miRNA: 3'- -CGGCCGCU----AGC----UCGUGGC--UGCa-----GACU- -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 21956 | 0.67 | 0.472669 |
Target: 5'- cGCCGGUGAUcacCGAuGCGCUGgauaGCGUCa-- -3' miRNA: 3'- -CGGCCGCUA---GCU-CGUGGC----UGCAGacu -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 33571 | 0.67 | 0.452659 |
Target: 5'- cGCuUGGCGAUCGAcagcgcgcuggGCACCGuuGUCcGGc -3' miRNA: 3'- -CG-GCCGCUAGCU-----------CGUGGCugCAGaCU- -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 22548 | 0.68 | 0.442829 |
Target: 5'- cGCCGGCGGaggaGAGCcugAUCGACGgccaaCUGGc -3' miRNA: 3'- -CGGCCGCUag--CUCG---UGGCUGCa----GACU- -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 33146 | 0.69 | 0.394653 |
Target: 5'- gGCCGGUGcUCGGGCAgCGGCccgaggaGUCcGAa -3' miRNA: 3'- -CGGCCGCuAGCUCGUgGCUG-------CAGaCU- -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 23658 | 0.7 | 0.335121 |
Target: 5'- cCUGGUGAUCGAGCGCUuGCGUg--- -3' miRNA: 3'- cGGCCGCUAGCUCGUGGcUGCAgacu -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 37547 | 0.7 | 0.319138 |
Target: 5'- cGCCGGCGGUUGGGCugaGugGaCUGu -3' miRNA: 3'- -CGGCCGCUAGCUCGuggCugCaGACu -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 20820 | 0.73 | 0.20075 |
Target: 5'- uCCGGUGAUCGAGCuGCUGGugaGUCUGc -3' miRNA: 3'- cGGCCGCUAGCUCG-UGGCUg--CAGACu -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 22686 | 0.75 | 0.148819 |
Target: 5'- cGCUGGCGAUCGAGCAgCu-CGUCg-- -3' miRNA: 3'- -CGGCCGCUAGCUCGUgGcuGCAGacu -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 1522 | 0.67 | 0.462607 |
Target: 5'- uGCCGGCGAccgccUCG-GCG-CGAUG-CUGAc -3' miRNA: 3'- -CGGCCGCU-----AGCuCGUgGCUGCaGACU- -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 21893 | 0.68 | 0.43312 |
Target: 5'- gGCCucGCGAUCGAGCAggaucagguUgGugGUCUGc -3' miRNA: 3'- -CGGc-CGCUAGCUCGU---------GgCugCAGACu -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 33626 | 0.68 | 0.43312 |
Target: 5'- cGCUGuCGAUCGccaAGCGCuCGACGUCg-- -3' miRNA: 3'- -CGGCcGCUAGC---UCGUG-GCUGCAGacu -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 20078 | 0.69 | 0.369685 |
Target: 5'- gGCCGGCGcAUUGAGCuuggggugGCCGAUGacgagcggggccucgCUGAg -3' miRNA: 3'- -CGGCCGC-UAGCUCG--------UGGCUGCa--------------GACU- -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 6021 | 0.69 | 0.351681 |
Target: 5'- aCCGGUGAUCGGGCA--GACGUucagccgucaggCUGAg -3' miRNA: 3'- cGGCCGCUAGCUCGUggCUGCA------------GACU- -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 22781 | 0.71 | 0.288908 |
Target: 5'- gGCCGGCa--CGAGCACCuucuGCGcCUGAa -3' miRNA: 3'- -CGGCCGcuaGCUCGUGGc---UGCaGACU- -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 11747 | 0.66 | 0.567486 |
Target: 5'- uGCgCGGCGcgCGgcGGCGCCGGgGUUg-- -3' miRNA: 3'- -CG-GCCGCuaGC--UCGUGGCUgCAGacu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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