miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30499 3' -55.2 NC_006548.1 + 8288 0.66 0.618059
Target:  5'- aCugCCACCAaaccgaaauCCGCAGuAGAGCUGcCGg -3'
miRNA:   3'- -GugGGUGGU---------GGCGUUcUUUCGGCaGU- -5'
30499 3' -55.2 NC_006548.1 + 9350 0.66 0.618059
Target:  5'- gCAUCCGCCAgCGUcuccAGAucgucggcuAGGCCGUCc -3'
miRNA:   3'- -GUGGGUGGUgGCGu---UCU---------UUCGGCAGu -5'
30499 3' -55.2 NC_006548.1 + 18655 0.66 0.618059
Target:  5'- aGCCauggcgacaACCGCCGCAGGGcuGCCcaaggcguuGUCAc -3'
miRNA:   3'- gUGGg--------UGGUGGCGUUCUuuCGG---------CAGU- -5'
30499 3' -55.2 NC_006548.1 + 501 0.66 0.611245
Target:  5'- gAUCCGCCGCCggaacaacaugcucaGCGAGcuGGCCGa-- -3'
miRNA:   3'- gUGGGUGGUGG---------------CGUUCuuUCGGCagu -5'
30499 3' -55.2 NC_006548.1 + 30545 0.66 0.606706
Target:  5'- gCACCCGCgGgCUGUAGuugacGAAGGCUGUCc -3'
miRNA:   3'- -GUGGGUGgU-GGCGUU-----CUUUCGGCAGu -5'
30499 3' -55.2 NC_006548.1 + 32807 0.66 0.595377
Target:  5'- cCGCCCGCCccaGCCuGCAAGGcugAGGUCGa-- -3'
miRNA:   3'- -GUGGGUGG---UGG-CGUUCU---UUCGGCagu -5'
30499 3' -55.2 NC_006548.1 + 33523 0.66 0.595377
Target:  5'- -uUCCACCGCCGCAuccucgacgucAGcGAGCugaaCGUCGa -3'
miRNA:   3'- guGGGUGGUGGCGU-----------UCuUUCG----GCAGU- -5'
30499 3' -55.2 NC_006548.1 + 8094 0.66 0.594246
Target:  5'- gCGCCUcauugACCA-CGCGgaugcggucguaaGGGAGGCCGUCGc -3'
miRNA:   3'- -GUGGG-----UGGUgGCGU-------------UCUUUCGGCAGU- -5'
30499 3' -55.2 NC_006548.1 + 38290 0.66 0.584081
Target:  5'- uGCCC-UC-CCGCAAGAAucGGCCGa-- -3'
miRNA:   3'- gUGGGuGGuGGCGUUCUU--UCGGCagu -5'
30499 3' -55.2 NC_006548.1 + 17407 0.66 0.582953
Target:  5'- aCGCCUuCCACCGaguucgcCGAGGGcgaucAGCCGUCc -3'
miRNA:   3'- -GUGGGuGGUGGC-------GUUCUU-----UCGGCAGu -5'
30499 3' -55.2 NC_006548.1 + 16970 0.66 0.5807
Target:  5'- uGCCCGCCggcaugcaggcggaGCUGCu-GGAAGCCGg-- -3'
miRNA:   3'- gUGGGUGG--------------UGGCGuuCUUUCGGCagu -5'
30499 3' -55.2 NC_006548.1 + 24266 0.66 0.572828
Target:  5'- gCGgCCACCGCCGCcAAGGAGuaaaucaugucGCUGUUu -3'
miRNA:   3'- -GUgGGUGGUGGCG-UUCUUU-----------CGGCAGu -5'
30499 3' -55.2 NC_006548.1 + 16109 0.67 0.550485
Target:  5'- gACCCAgCGCC-C-AGAAcucgucggcauGGCCGUCAg -3'
miRNA:   3'- gUGGGUgGUGGcGuUCUU-----------UCGGCAGU- -5'
30499 3' -55.2 NC_006548.1 + 28892 0.67 0.550485
Target:  5'- cCACCgGCCaaACCGuCGAGgcGGCCGg-- -3'
miRNA:   3'- -GUGGgUGG--UGGC-GUUCuuUCGGCagu -5'
30499 3' -55.2 NC_006548.1 + 12309 0.67 0.539413
Target:  5'- uGCCCGgUACCGCugaguGGAucGCCGg-- -3'
miRNA:   3'- gUGGGUgGUGGCGu----UCUuuCGGCagu -5'
30499 3' -55.2 NC_006548.1 + 22543 0.67 0.528417
Target:  5'- aCAgCCGCCGgCGgAGGAGAGCCuGaUCGa -3'
miRNA:   3'- -GUgGGUGGUgGCgUUCUUUCGG-C-AGU- -5'
30499 3' -55.2 NC_006548.1 + 38330 0.67 0.528417
Target:  5'- cCAUCgGCCAcCCGCucAGAcaGAGCgGUCAg -3'
miRNA:   3'- -GUGGgUGGU-GGCGu-UCU--UUCGgCAGU- -5'
30499 3' -55.2 NC_006548.1 + 21381 0.67 0.528417
Target:  5'- aGCgCAUCACCGCGAGugacguuGCCGcCGu -3'
miRNA:   3'- gUGgGUGGUGGCGUUCuuu----CGGCaGU- -5'
30499 3' -55.2 NC_006548.1 + 29672 0.67 0.517505
Target:  5'- cCAUUCGCgGCCGCAAGAcuGGCUG-CGg -3'
miRNA:   3'- -GUGGGUGgUGGCGUUCUu-UCGGCaGU- -5'
30499 3' -55.2 NC_006548.1 + 25480 0.67 0.517505
Target:  5'- uCACCU--CGCCGaCAAGAAagGGCCGUUg -3'
miRNA:   3'- -GUGGGugGUGGC-GUUCUU--UCGGCAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.