miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30499 3' -55.2 NC_006548.1 + 5086 1.08 0.000718
Target:  5'- uCACCCACCACCGCAAGAAAGCCGUCAu -3'
miRNA:   3'- -GUGGGUGGUGGCGUUCUUUCGGCAGU- -5'
30499 3' -55.2 NC_006548.1 + 20533 0.74 0.190795
Target:  5'- uCugCCGCCGCUGCGGaAGAGCCG-CAg -3'
miRNA:   3'- -GugGGUGGUGGCGUUcUUUCGGCaGU- -5'
30499 3' -55.2 NC_006548.1 + 23385 0.72 0.271219
Target:  5'- -cCCCGgCGCUG-GAGGAAGCCGUCGa -3'
miRNA:   3'- guGGGUgGUGGCgUUCUUUCGGCAGU- -5'
30499 3' -55.2 NC_006548.1 + 35930 0.72 0.293278
Target:  5'- gGCCUACCgACCgGCGAGuuGGCCGgCAg -3'
miRNA:   3'- gUGGGUGG-UGG-CGUUCuuUCGGCaGU- -5'
30499 3' -55.2 NC_006548.1 + 13367 0.71 0.330606
Target:  5'- gGCCCGCCGCCgguucugacgccgaGCuauuGGAAAGCggCGUCAc -3'
miRNA:   3'- gUGGGUGGUGG--------------CGu---UCUUUCG--GCAGU- -5'
30499 3' -55.2 NC_006548.1 + 18339 0.7 0.358842
Target:  5'- aACCuCGCC-CCGguAGGucAGCCGUCGc -3'
miRNA:   3'- gUGG-GUGGuGGCguUCUu-UCGGCAGU- -5'
30499 3' -55.2 NC_006548.1 + 7611 0.69 0.404737
Target:  5'- aGCuCUGCCGCgCGCuGGucGGCCGUCAu -3'
miRNA:   3'- gUG-GGUGGUG-GCGuUCuuUCGGCAGU- -5'
30499 3' -55.2 NC_006548.1 + 36908 0.69 0.414351
Target:  5'- aACCgGCUGCUGCA----GGCCGUCAa -3'
miRNA:   3'- gUGGgUGGUGGCGUucuuUCGGCAGU- -5'
30499 3' -55.2 NC_006548.1 + 30548 0.69 0.433993
Target:  5'- uCGCCaACgGCCGCAGGuucuggcuGGUCGUCAa -3'
miRNA:   3'- -GUGGgUGgUGGCGUUCuu------UCGGCAGU- -5'
30499 3' -55.2 NC_006548.1 + 34593 0.69 0.444014
Target:  5'- -uCCUACCACCa-AGGGucGCCGUCGa -3'
miRNA:   3'- guGGGUGGUGGcgUUCUuuCGGCAGU- -5'
30499 3' -55.2 NC_006548.1 + 1390 0.69 0.444014
Target:  5'- uGCCCGCCGCCGgcCAGGAAcuGCUGa-- -3'
miRNA:   3'- gUGGGUGGUGGC--GUUCUUu-CGGCagu -5'
30499 3' -55.2 NC_006548.1 + 1105 0.68 0.454164
Target:  5'- aCGCCCAauUCGCgaGCGAGccuGGCCGUCu -3'
miRNA:   3'- -GUGGGU--GGUGg-CGUUCuu-UCGGCAGu -5'
30499 3' -55.2 NC_006548.1 + 16246 0.68 0.474833
Target:  5'- --aCCGCgCACCGCGccGAAGCCGUg- -3'
miRNA:   3'- gugGGUG-GUGGCGUucUUUCGGCAgu -5'
30499 3' -55.2 NC_006548.1 + 22131 0.68 0.474833
Target:  5'- uGCCC-UCGUCGcCGAGGGAGCCGUUAu -3'
miRNA:   3'- gUGGGuGGUGGC-GUUCUUUCGGCAGU- -5'
30499 3' -55.2 NC_006548.1 + 20796 0.68 0.474833
Target:  5'- cCGCCUGCUGCCGCGccAGAAGGCUc--- -3'
miRNA:   3'- -GUGGGUGGUGGCGU--UCUUUCGGcagu -5'
30499 3' -55.2 NC_006548.1 + 36394 0.68 0.485343
Target:  5'- uGCCCAgCGCaGCGAGGAuGCCuGUCu -3'
miRNA:   3'- gUGGGUgGUGgCGUUCUUuCGG-CAGu -5'
30499 3' -55.2 NC_006548.1 + 35322 0.68 0.495962
Target:  5'- cCGCCCACCAUCGCc-----GCCaGUCGa -3'
miRNA:   3'- -GUGGGUGGUGGCGuucuuuCGG-CAGU- -5'
30499 3' -55.2 NC_006548.1 + 16239 0.68 0.495962
Target:  5'- aGCCCGCCcuugGCCGgGAGAucGCCa--- -3'
miRNA:   3'- gUGGGUGG----UGGCgUUCUuuCGGcagu -5'
30499 3' -55.2 NC_006548.1 + 21664 0.68 0.495962
Target:  5'- aACCCugguCgGCCGCAAGuccAAGCCGa-- -3'
miRNA:   3'- gUGGGu---GgUGGCGUUCu--UUCGGCagu -5'
30499 3' -55.2 NC_006548.1 + 24813 0.68 0.495962
Target:  5'- uCACCgCACCACCGCcGGAgcGCUa--- -3'
miRNA:   3'- -GUGG-GUGGUGGCGuUCUuuCGGcagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.