Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3050 | 5' | -53.8 | NC_001493.1 | + | 29738 | 1.11 | 0.00329 |
Target: 5'- cCUUCGAGAGGUCCAUCACGGUGGUCCc -3' miRNA: 3'- -GAAGCUCUCCAGGUAGUGCCACCAGG- -5' |
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3050 | 5' | -53.8 | NC_001493.1 | + | 61942 | 0.66 | 0.964064 |
Target: 5'- --cCGAGAGGUCgaAUC-CGGcGGaUCCc -3' miRNA: 3'- gaaGCUCUCCAGg-UAGuGCCaCC-AGG- -5' |
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3050 | 5' | -53.8 | NC_001493.1 | + | 119425 | 0.66 | 0.960593 |
Target: 5'- uUUCGGGAcaugagccGGUCCGUC-CGG-GGUg- -3' miRNA: 3'- gAAGCUCU--------CCAGGUAGuGCCaCCAgg -5' |
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3050 | 5' | -53.8 | NC_001493.1 | + | 59845 | 0.66 | 0.960593 |
Target: 5'- -aUCGGGAcGGUggucacaaCCGUCACGGacuacacgGGUCg -3' miRNA: 3'- gaAGCUCU-CCA--------GGUAGUGCCa-------CCAGg -5' |
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3050 | 5' | -53.8 | NC_001493.1 | + | 3871 | 0.66 | 0.960593 |
Target: 5'- uUUCGGGAcaugagccGGUCCGUC-CGG-GGUg- -3' miRNA: 3'- gAAGCUCU--------CCAGGUAGuGCCaCCAgg -5' |
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3050 | 5' | -53.8 | NC_001493.1 | + | 27609 | 0.66 | 0.95297 |
Target: 5'- -cUCGAGGGGaCCcgCGCGGgcucgGGaUCg -3' miRNA: 3'- gaAGCUCUCCaGGuaGUGCCa----CC-AGg -5' |
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3050 | 5' | -53.8 | NC_001493.1 | + | 105325 | 0.66 | 0.95297 |
Target: 5'- --gCGAGAcaGGUCUugagCACGG-GGUCUc -3' miRNA: 3'- gaaGCUCU--CCAGGua--GUGCCaCCAGG- -5' |
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3050 | 5' | -53.8 | NC_001493.1 | + | 84251 | 0.67 | 0.944413 |
Target: 5'- gUUCGAuc-GUCCAUCGCuG-GGUCCa -3' miRNA: 3'- gAAGCUcucCAGGUAGUGcCaCCAGG- -5' |
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3050 | 5' | -53.8 | NC_001493.1 | + | 132913 | 0.67 | 0.934897 |
Target: 5'- -cUCGAGAcucGGUCuCAUCGCaG-GGUCUc -3' miRNA: 3'- gaAGCUCU---CCAG-GUAGUGcCaCCAGG- -5' |
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3050 | 5' | -53.8 | NC_001493.1 | + | 17359 | 0.67 | 0.934897 |
Target: 5'- -cUCGAGAcucGGUCuCAUCGCaG-GGUCUc -3' miRNA: 3'- gaAGCUCU---CCAG-GUAGUGcCaCCAGG- -5' |
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3050 | 5' | -53.8 | NC_001493.1 | + | 87232 | 0.76 | 0.511512 |
Target: 5'- -cUCGGGGGGUCCAaCGCGGgggggauaucggagaUGGUCg -3' miRNA: 3'- gaAGCUCUCCAGGUaGUGCC---------------ACCAGg -5' |
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3050 | 5' | -53.8 | NC_001493.1 | + | 108698 | 0.73 | 0.639781 |
Target: 5'- -cUCGAGccucGGGUCCAUCGCaGGcgaUGGUCg -3' miRNA: 3'- gaAGCUC----UCCAGGUAGUG-CC---ACCAGg -5' |
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3050 | 5' | -53.8 | NC_001493.1 | + | 106199 | 0.72 | 0.70141 |
Target: 5'- -cUUGAGuAGGUCgcUCGCGGUGGcCCu -3' miRNA: 3'- gaAGCUC-UCCAGguAGUGCCACCaGG- -5' |
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3050 | 5' | -53.8 | NC_001493.1 | + | 112189 | 0.69 | 0.849739 |
Target: 5'- ---aGAGAuaccgaugccGGUCCAUUGCGGUGGcUCg -3' miRNA: 3'- gaagCUCU----------CCAGGUAGUGCCACC-AGg -5' |
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3050 | 5' | -53.8 | NC_001493.1 | + | 111630 | 0.68 | 0.887127 |
Target: 5'- -gUCGucGAGGUCUcgCuCGGaggGGUCCg -3' miRNA: 3'- gaAGCu-CUCCAGGuaGuGCCa--CCAGG- -5' |
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3050 | 5' | -53.8 | NC_001493.1 | + | 113581 | 0.67 | 0.924407 |
Target: 5'- -gUCGuGuGGaaCCAUCGgGGUGGUCg -3' miRNA: 3'- gaAGCuCuCCa-GGUAGUgCCACCAGg -5' |
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3050 | 5' | -53.8 | NC_001493.1 | + | 69268 | 0.66 | 0.963046 |
Target: 5'- uCUUCGGaauacuguGGGuugaacagggcccuGUCCGUCACGG-GGUUCg -3' miRNA: 3'- -GAAGCU--------CUC--------------CAGGUAGUGCCaCCAGG- -5' |
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3050 | 5' | -53.8 | NC_001493.1 | + | 12994 | 0.76 | 0.497815 |
Target: 5'- gUUCGAGAaucgGGUCUcuGUCACGGggccggacgGGUCCg -3' miRNA: 3'- gAAGCUCU----CCAGG--UAGUGCCa--------CCAGG- -5' |
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3050 | 5' | -53.8 | NC_001493.1 | + | 37778 | 0.7 | 0.833329 |
Target: 5'- aCUUCGcuauacGAGGuUCCAcUCACGG-GGUUCg -3' miRNA: 3'- -GAAGCu-----CUCC-AGGU-AGUGCCaCCAGG- -5' |
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3050 | 5' | -53.8 | NC_001493.1 | + | 102452 | 0.69 | 0.849739 |
Target: 5'- -gUCGGGGGGUCgCG--ACGGccGGUCCu -3' miRNA: 3'- gaAGCUCUCCAG-GUagUGCCa-CCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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