miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30501 3' -55.1 NC_006548.1 + 24890 0.66 0.656362
Target:  5'- gCCGUCcagCAGGAUGUagcgcuccggcgGUGGUGCGgUGa -3'
miRNA:   3'- -GGUAGua-GUCCUACG------------CACCGUGCgGC- -5'
30501 3' -55.1 NC_006548.1 + 26004 0.66 0.656362
Target:  5'- cCCAUCAUCcccuGGAUaGgG-GGaaaGCGCCGc -3'
miRNA:   3'- -GGUAGUAGu---CCUA-CgCaCCg--UGCGGC- -5'
30501 3' -55.1 NC_006548.1 + 15418 0.66 0.645121
Target:  5'- gCAUCcugCAGGGUGacCGUGuGCAgGCUGa -3'
miRNA:   3'- gGUAGua-GUCCUAC--GCAC-CGUgCGGC- -5'
30501 3' -55.1 NC_006548.1 + 15230 0.66 0.633867
Target:  5'- --cUCGUcCAGGAUGCGUccgccGCGCuuGCCGg -3'
miRNA:   3'- gguAGUA-GUCCUACGCAc----CGUG--CGGC- -5'
30501 3' -55.1 NC_006548.1 + 29811 0.66 0.611365
Target:  5'- gUCAUCAUcCGGGcgGCGgccGCAacccaGCCGg -3'
miRNA:   3'- -GGUAGUA-GUCCuaCGCac-CGUg----CGGC- -5'
30501 3' -55.1 NC_006548.1 + 32545 0.66 0.611365
Target:  5'- -aGUCAUUAccggaaaccGGAUcaccGCGUGGCcguuuGCGCCGg -3'
miRNA:   3'- ggUAGUAGU---------CCUA----CGCACCG-----UGCGGC- -5'
30501 3' -55.1 NC_006548.1 + 27032 0.66 0.600138
Target:  5'- gCCcgCAUCAGGGccaUG-GUGGCG-GCCu -3'
miRNA:   3'- -GGuaGUAGUCCU---ACgCACCGUgCGGc -5'
30501 3' -55.1 NC_006548.1 + 22932 0.66 0.600138
Target:  5'- gCCGgacUAUCGGGGUGgacUGGC-CGCCGg -3'
miRNA:   3'- -GGUa--GUAGUCCUACgc-ACCGuGCGGC- -5'
30501 3' -55.1 NC_006548.1 + 2326 0.67 0.555605
Target:  5'- uCCuguUCGUC-GGcUGCGcGGCGgCGCCGg -3'
miRNA:   3'- -GGu--AGUAGuCCuACGCaCCGU-GCGGC- -5'
30501 3' -55.1 NC_006548.1 + 5290 0.72 0.292047
Target:  5'- aCGUUuUCGGGGguugcaggagccucgGCGuUGGCGCGCCGg -3'
miRNA:   3'- gGUAGuAGUCCUa--------------CGC-ACCGUGCGGC- -5'
30501 3' -55.1 NC_006548.1 + 23664 0.73 0.279544
Target:  5'- gCCAUCucaguaguccuUCAGGGUGuCGUGGCugaaggugcgagcggGCGCCa -3'
miRNA:   3'- -GGUAGu----------AGUCCUAC-GCACCG---------------UGCGGc -5'
30501 3' -55.1 NC_006548.1 + 36092 0.74 0.242655
Target:  5'- aCGUCGcCAGGGUucaGCGcauaGGCGCGCCGa -3'
miRNA:   3'- gGUAGUaGUCCUA---CGCa---CCGUGCGGC- -5'
30501 3' -55.1 NC_006548.1 + 6548 1.1 0.000593
Target:  5'- uCCAUCAUCAGGAUGCGUGGCACGCCGu -3'
miRNA:   3'- -GGUAGUAGUCCUACGCACCGUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.