miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30502 5' -55.7 NC_006548.1 + 6357 0.66 0.605551
Target:  5'- gGGCGuUGAguucguccAGGUCgUUGACCGguUCGa -3'
miRNA:   3'- aCCGC-GCU--------UCUAGgAGCUGGCguAGU- -5'
30502 5' -55.7 NC_006548.1 + 2623 0.66 0.583109
Target:  5'- gGGUGUGAcauGGA-CCagGACCGUAUCc -3'
miRNA:   3'- aCCGCGCU---UCUaGGagCUGGCGUAGu -5'
30502 5' -55.7 NC_006548.1 + 4250 0.66 0.583109
Target:  5'- gGGCGCGGguGGcGUUgUUGACgGCAUCc -3'
miRNA:   3'- aCCGCGCU--UC-UAGgAGCUGgCGUAGu -5'
30502 5' -55.7 NC_006548.1 + 18698 0.66 0.570834
Target:  5'- cUGGCcgagcuaGCGAcccugccgcAGAUCCUCGcccaGCCGCAg-- -3'
miRNA:   3'- -ACCG-------CGCU---------UCUAGGAGC----UGGCGUagu -5'
30502 5' -55.7 NC_006548.1 + 9060 0.66 0.560837
Target:  5'- cGGCGCuccaGAAGccCCUCuGGCCGuCAUCc -3'
miRNA:   3'- aCCGCG----CUUCuaGGAG-CUGGC-GUAGu -5'
30502 5' -55.7 NC_006548.1 + 16512 0.66 0.549788
Target:  5'- -aGCGCGuGGG-CUggGACCGCGUCAc -3'
miRNA:   3'- acCGCGCuUCUaGGagCUGGCGUAGU- -5'
30502 5' -55.7 NC_006548.1 + 29324 0.66 0.547586
Target:  5'- gGGUauugucgagcugcugGCGGAGAUCCUucacgcgcucgaucgCGGCCGgAUCGc -3'
miRNA:   3'- aCCG---------------CGCUUCUAGGA---------------GCUGGCgUAGU- -5'
30502 5' -55.7 NC_006548.1 + 19751 0.67 0.527901
Target:  5'- aGGCGuCGAuacGGGUUgUCGG-CGCGUCAc -3'
miRNA:   3'- aCCGC-GCU---UCUAGgAGCUgGCGUAGU- -5'
30502 5' -55.7 NC_006548.1 + 22427 0.67 0.506346
Target:  5'- cGGUGCGguGAccaguUCCUUGACCGacUCAc -3'
miRNA:   3'- aCCGCGCuuCU-----AGGAGCUGGCguAGU- -5'
30502 5' -55.7 NC_006548.1 + 32720 0.67 0.495709
Target:  5'- gGGCGCGAGcgcguGcUCCUCGACCuCAg-- -3'
miRNA:   3'- aCCGCGCUU-----CuAGGAGCUGGcGUagu -5'
30502 5' -55.7 NC_006548.1 + 31957 0.69 0.424409
Target:  5'- aGGCGCGAGGAaguccaUCCggcacaGACCGaaAUCAg -3'
miRNA:   3'- aCCGCGCUUCU------AGGag----CUGGCg-UAGU- -5'
30502 5' -55.7 NC_006548.1 + 33510 0.7 0.359598
Target:  5'- cGGCGgGcAGGUCUUCcaccGCCGCAUCc -3'
miRNA:   3'- aCCGCgCuUCUAGGAGc---UGGCGUAGu -5'
30502 5' -55.7 NC_006548.1 + 7492 0.7 0.342394
Target:  5'- aGGCGCGAuGGucggcaccuugcUCCUCGGCCuGC-UCGg -3'
miRNA:   3'- aCCGCGCUuCU------------AGGAGCUGG-CGuAGU- -5'
30502 5' -55.7 NC_006548.1 + 18157 0.72 0.272445
Target:  5'- aGGCcaggugcaguucGCGggGAUgUUCGACgGCAUCGc -3'
miRNA:   3'- aCCG------------CGCuuCUAgGAGCUGgCGUAGU- -5'
30502 5' -55.7 NC_006548.1 + 7015 1.09 0.000592
Target:  5'- cUGGCGCGAAGAUCCUCGACCGCAUCAg -3'
miRNA:   3'- -ACCGCGCUUCUAGGAGCUGGCGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.