miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30503 3' -57 NC_006548.1 + 9887 0.66 0.504433
Target:  5'- --aGCGGCCAUGGcgguGGCUCCUg-- -3'
miRNA:   3'- cugUGCCGGUACUagu-CCGAGGGuga -5'
30503 3' -57 NC_006548.1 + 17049 0.66 0.493807
Target:  5'- gGACGCGaccaucGCCAaGGUCGGGCUCggCCAg- -3'
miRNA:   3'- -CUGUGC------CGGUaCUAGUCCGAG--GGUga -5'
30503 3' -57 NC_006548.1 + 12958 0.66 0.493807
Target:  5'- cGGCGCaGCCGUGGUgacCAcGGCUCCgcaaGCUa -3'
miRNA:   3'- -CUGUGcCGGUACUA---GU-CCGAGGg---UGA- -5'
30503 3' -57 NC_006548.1 + 13059 0.66 0.483285
Target:  5'- cGGCGCGGCCGgu----GGCguaCCCACg -3'
miRNA:   3'- -CUGUGCCGGUacuaguCCGa--GGGUGa -5'
30503 3' -57 NC_006548.1 + 18007 0.68 0.394035
Target:  5'- aGGCuCGGCCAcccUCcGGCUCCCAUUc -3'
miRNA:   3'- -CUGuGCCGGUacuAGuCCGAGGGUGA- -5'
30503 3' -57 NC_006548.1 + 32513 0.68 0.394035
Target:  5'- cGACACGGCCAcaGUCcagauGcGCUCCUGCa -3'
miRNA:   3'- -CUGUGCCGGUacUAGu----C-CGAGGGUGa -5'
30503 3' -57 NC_006548.1 + 6306 0.68 0.375695
Target:  5'- --gGCGGaCCAacUGAUCaAGGCgCCCACg -3'
miRNA:   3'- cugUGCC-GGU--ACUAG-UCCGaGGGUGa -5'
30503 3' -57 NC_006548.1 + 23151 0.69 0.340781
Target:  5'- uACACGGCCAcua-CGGccGCUCCCGCUc -3'
miRNA:   3'- cUGUGCCGGUacuaGUC--CGAGGGUGA- -5'
30503 3' -57 NC_006548.1 + 28542 0.69 0.316175
Target:  5'- cGGCGcCGGCCA-GGUCGcGGCgcuaCCCGCg -3'
miRNA:   3'- -CUGU-GCCGGUaCUAGU-CCGa---GGGUGa -5'
30503 3' -57 NC_006548.1 + 37162 0.7 0.278192
Target:  5'- cGACACGGCCu-----GGGCUUCCACc -3'
miRNA:   3'- -CUGUGCCGGuacuagUCCGAGGGUGa -5'
30503 3' -57 NC_006548.1 + 32977 0.7 0.264049
Target:  5'- cGGCGCuGGCCGg---CcGGCUCCCGCUu -3'
miRNA:   3'- -CUGUG-CCGGUacuaGuCCGAGGGUGA- -5'
30503 3' -57 NC_006548.1 + 22623 0.71 0.243935
Target:  5'- cGGCcaguUGGCCGUcGAUCAGGCUCUC-CUc -3'
miRNA:   3'- -CUGu---GCCGGUA-CUAGUCCGAGGGuGA- -5'
30503 3' -57 NC_006548.1 + 7320 1.07 0.000518
Target:  5'- aGACACGGCCAUGAUCAGGCUCCCACUc -3'
miRNA:   3'- -CUGUGCCGGUACUAGUCCGAGGGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.