Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30505 | 3' | -62.8 | NC_006548.1 | + | 8647 | 1.1 | 0.000106 |
Target: 5'- uCCAGGCCCGCCCGCAGCGCGUCCAAGg -3' miRNA: 3'- -GGUCCGGGCGGGCGUCGCGCAGGUUC- -5' |
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30505 | 3' | -62.8 | NC_006548.1 | + | 36590 | 0.66 | 0.289111 |
Target: 5'- gCCGcGGCCgGCaCCGCGGUGCucgCgCGGGg -3' miRNA: 3'- -GGU-CCGGgCG-GGCGUCGCGca-G-GUUC- -5' |
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30505 | 3' | -62.8 | NC_006548.1 | + | 31157 | 0.66 | 0.268505 |
Target: 5'- aCuuGCUCGCCaaGCuGCGCGUCCAc- -3' miRNA: 3'- gGucCGGGCGGg-CGuCGCGCAGGUuc -5' |
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30505 | 3' | -62.8 | NC_006548.1 | + | 29965 | 0.66 | 0.261904 |
Target: 5'- uCCGGGCCUGgCUGCuucGCGCcuaCAAGa -3' miRNA: 3'- -GGUCCGGGCgGGCGu--CGCGcagGUUC- -5' |
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30505 | 3' | -62.8 | NC_006548.1 | + | 23797 | 0.66 | 0.255436 |
Target: 5'- cCCAaGCCCGCCgGCcaugccgguGGCGCGaCCcGGc -3' miRNA: 3'- -GGUcCGGGCGGgCG---------UCGCGCaGGuUC- -5' |
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30505 | 3' | -62.8 | NC_006548.1 | + | 13309 | 0.67 | 0.219349 |
Target: 5'- gCC-GGUuuGCCCGCcgcaggAGCGCGcgCCGAu -3' miRNA: 3'- -GGuCCGggCGGGCG------UCGCGCa-GGUUc -5' |
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30505 | 3' | -62.8 | NC_006548.1 | + | 24436 | 0.68 | 0.21049 |
Target: 5'- cUCGGGCaaCCGCCUgcaauauggccgcuuGCAGCGCGg-CAAGa -3' miRNA: 3'- -GGUCCG--GGCGGG---------------CGUCGCGCagGUUC- -5' |
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30505 | 3' | -62.8 | NC_006548.1 | + | 12816 | 0.68 | 0.202993 |
Target: 5'- gCCAGuGCCgCGCgaGCGGCGCGguaagUCCGGu -3' miRNA: 3'- -GGUC-CGG-GCGggCGUCGCGC-----AGGUUc -5' |
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30505 | 3' | -62.8 | NC_006548.1 | + | 25072 | 0.68 | 0.192686 |
Target: 5'- cCCA-GCCCGCCC-CGGCcacCGaUCCAGGg -3' miRNA: 3'- -GGUcCGGGCGGGcGUCGc--GC-AGGUUC- -5' |
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30505 | 3' | -62.8 | NC_006548.1 | + | 20509 | 0.67 | 0.219349 |
Target: 5'- aCCguGGGUgaCUGCUCGCcGCGCGUCCu-- -3' miRNA: 3'- -GG--UCCG--GGCGGGCGuCGCGCAGGuuc -5' |
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30505 | 3' | -62.8 | NC_006548.1 | + | 20928 | 0.67 | 0.213776 |
Target: 5'- aCCuGGCCguCGCCCuCGGCGaacUCCAGGg -3' miRNA: 3'- -GGuCCGG--GCGGGcGUCGCgc-AGGUUC- -5' |
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30505 | 3' | -62.8 | NC_006548.1 | + | 30305 | 0.68 | 0.18284 |
Target: 5'- gUAGGCCUGCCCaGC--CGCGaCCAGGu -3' miRNA: 3'- gGUCCGGGCGGG-CGucGCGCaGGUUC- -5' |
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30505 | 3' | -62.8 | NC_006548.1 | + | 14348 | 0.69 | 0.164476 |
Target: 5'- gCAGGUCCGCgauCAGCuCGUCCAGGg -3' miRNA: 3'- gGUCCGGGCGggcGUCGcGCAGGUUC- -5' |
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30505 | 3' | -62.8 | NC_006548.1 | + | 12591 | 0.69 | 0.15593 |
Target: 5'- aCCAGGCCaGCUgGuCGGCGcCGgaugCCGAGg -3' miRNA: 3'- -GGUCCGGgCGGgC-GUCGC-GCa---GGUUC- -5' |
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30505 | 3' | -62.8 | NC_006548.1 | + | 4617 | 0.7 | 0.151809 |
Target: 5'- gCCGGGCUgGCaaGCAGU-UGUCCGAGg -3' miRNA: 3'- -GGUCCGGgCGggCGUCGcGCAGGUUC- -5' |
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30505 | 3' | -62.8 | NC_006548.1 | + | 21826 | 0.71 | 0.122256 |
Target: 5'- gUCGGuGCguugucgauauCCGCCUGCggcaccGGCGCGUCCAGGc -3' miRNA: 3'- -GGUC-CG-----------GGCGGGCG------UCGCGCAGGUUC- -5' |
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30505 | 3' | -62.8 | NC_006548.1 | + | 1168 | 0.71 | 0.109568 |
Target: 5'- gCCAGGCUCGCUCGCGaauuGgGCGUCa--- -3' miRNA: 3'- -GGUCCGGGCGGGCGU----CgCGCAGguuc -5' |
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30505 | 3' | -62.8 | NC_006548.1 | + | 15226 | 0.73 | 0.080765 |
Target: 5'- uCCAGGaugcgUCCGCCgCGCuugccggccuGCGCGUCCGGGu -3' miRNA: 3'- -GGUCC-----GGGCGG-GCGu---------CGCGCAGGUUC- -5' |
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30505 | 3' | -62.8 | NC_006548.1 | + | 26023 | 0.75 | 0.062726 |
Target: 5'- uCCGGGCaagCGCUCGaUGGCGCGUUCAGGa -3' miRNA: 3'- -GGUCCGg--GCGGGC-GUCGCGCAGGUUC- -5' |
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30505 | 3' | -62.8 | NC_006548.1 | + | 9447 | 0.66 | 0.282107 |
Target: 5'- uCgAGGUCaGCUCGCGGCuacuuGCGUCCGc- -3' miRNA: 3'- -GgUCCGGgCGGGCGUCG-----CGCAGGUuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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