miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30505 5' -56 NC_006548.1 + 29683 0.66 0.538063
Target:  5'- ----cGGCUGCCGGUAguggcGGcuGGCUg -3'
miRNA:   3'- cagaaCCGACGGCCGUa----CCuuUCGGu -5'
30505 5' -56 NC_006548.1 + 32456 0.66 0.515988
Target:  5'- ----cGGCUGCCGGCcaGGcugauGCCAu -3'
miRNA:   3'- cagaaCCGACGGCCGuaCCuuu--CGGU- -5'
30505 5' -56 NC_006548.1 + 33335 0.66 0.483593
Target:  5'- gGUCUgccaacGGaaGCCGuGCAccGGGAAGCCAa -3'
miRNA:   3'- -CAGAa-----CCgaCGGC-CGUa-CCUUUCGGU- -5'
30505 5' -56 NC_006548.1 + 22537 0.67 0.462549
Target:  5'- ----cGGCgcacagccGCCGGCGgaGGAGAGCCu -3'
miRNA:   3'- cagaaCCGa-------CGGCCGUa-CCUUUCGGu -5'
30505 5' -56 NC_006548.1 + 632 0.67 0.452208
Target:  5'- ----aGGCgGCCGGCcUGGAAcagcuGCCGa -3'
miRNA:   3'- cagaaCCGaCGGCCGuACCUUu----CGGU- -5'
30505 5' -56 NC_006548.1 + 13728 0.68 0.421968
Target:  5'- ---aUGGCguccaGCCGGUA-GGAGAGCUg -3'
miRNA:   3'- cagaACCGa----CGGCCGUaCCUUUCGGu -5'
30505 5' -56 NC_006548.1 + 18189 0.68 0.421968
Target:  5'- ----aGGaUUGUCGGCAUGGAucaccAGGCCGu -3'
miRNA:   3'- cagaaCC-GACGGCCGUACCU-----UUCGGU- -5'
30505 5' -56 NC_006548.1 + 37964 0.68 0.392978
Target:  5'- aUCUugagcUGGgUGCCGGCGgugaGGuAGGCCGu -3'
miRNA:   3'- cAGA-----ACCgACGGCCGUa---CCuUUCGGU- -5'
30505 5' -56 NC_006548.1 + 30503 0.7 0.314132
Target:  5'- ----gGGUgcaacUGCUGGCAUGGAAccAGCCGa -3'
miRNA:   3'- cagaaCCG-----ACGGCCGUACCUU--UCGGU- -5'
30505 5' -56 NC_006548.1 + 25816 0.71 0.241251
Target:  5'- -cCUUGGCUggGCUGGCAcUGGGuuGCCu -3'
miRNA:   3'- caGAACCGA--CGGCCGU-ACCUuuCGGu -5'
30505 5' -56 NC_006548.1 + 8684 1.08 0.000449
Target:  5'- gGUCUUGGCUGCCGGCAUGGAAAGCCAg -3'
miRNA:   3'- -CAGAACCGACGGCCGUACCUUUCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.