miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30507 5' -61.6 NC_006548.1 + 19142 0.66 0.346948
Target:  5'- cGCUGG-GAGAUCCgaGCGGGCUuCUGc -3'
miRNA:   3'- -CGGCUaCUCUAGGg-CGCCCGGcGGCu -5'
30507 5' -61.6 NC_006548.1 + 18502 0.66 0.338894
Target:  5'- cGCCaAUGAcccggUCCGuCGuGGCCGCCGGg -3'
miRNA:   3'- -CGGcUACUcua--GGGC-GC-CCGGCGGCU- -5'
30507 5' -61.6 NC_006548.1 + 36513 0.66 0.338096
Target:  5'- gGCCGAuaucugcUGAGAUCgUCGCgaccGGGCagaaguCGCCGGa -3'
miRNA:   3'- -CGGCU-------ACUCUAG-GGCG----CCCG------GCGGCU- -5'
30507 5' -61.6 NC_006548.1 + 28624 0.66 0.330976
Target:  5'- aCCGGUGAcGGUagUCGCGGGUagCGCCGc -3'
miRNA:   3'- cGGCUACU-CUAg-GGCGCCCG--GCGGCu -5'
30507 5' -61.6 NC_006548.1 + 35876 0.66 0.315552
Target:  5'- uGCCGgcGcGAUCCgCGCGG-CCGgCGGc -3'
miRNA:   3'- -CGGCuaCuCUAGG-GCGCCcGGCgGCU- -5'
30507 5' -61.6 NC_006548.1 + 13743 0.66 0.315552
Target:  5'- aCUGAUGAG--CCUgaagGCGGaGCUGCCGAu -3'
miRNA:   3'- cGGCUACUCuaGGG----CGCC-CGGCGGCU- -5'
30507 5' -61.6 NC_006548.1 + 22657 0.67 0.300676
Target:  5'- uGCCGAUcugGAGAUCCa--GGacGCCGCCa- -3'
miRNA:   3'- -CGGCUA---CUCUAGGgcgCC--CGGCGGcu -5'
30507 5' -61.6 NC_006548.1 + 35745 0.67 0.279388
Target:  5'- uUCGAUGAGGaCa-GCGGGCUGCuCGGg -3'
miRNA:   3'- cGGCUACUCUaGggCGCCCGGCG-GCU- -5'
30507 5' -61.6 NC_006548.1 + 29168 0.67 0.265873
Target:  5'- cGCUGAcGAGAccggCCUGCuGGGCgGCCu- -3'
miRNA:   3'- -CGGCUaCUCUa---GGGCG-CCCGgCGGcu -5'
30507 5' -61.6 NC_006548.1 + 36306 0.68 0.22272
Target:  5'- cUCGAUGAG--CCUGCGGGUCGCa-- -3'
miRNA:   3'- cGGCUACUCuaGGGCGCCCGGCGgcu -5'
30507 5' -61.6 NC_006548.1 + 28121 0.69 0.189117
Target:  5'- aGCCGccugcuGUGAGGcuggaccauaggccUCCUGCaGGGCCgcGCCGAa -3'
miRNA:   3'- -CGGC------UACUCU--------------AGGGCG-CCCGG--CGGCU- -5'
30507 5' -61.6 NC_006548.1 + 22097 0.7 0.171527
Target:  5'- uGCCGAUGGccuUCCUGCaGGaGCUGCUGGa -3'
miRNA:   3'- -CGGCUACUcu-AGGGCG-CC-CGGCGGCU- -5'
30507 5' -61.6 NC_006548.1 + 4091 0.75 0.079517
Target:  5'- gGCUGAcGAGAugcaaggugacccUCCCGCGGGUggucUGCCGAa -3'
miRNA:   3'- -CGGCUaCUCU-------------AGGGCGCCCG----GCGGCU- -5'
30507 5' -61.6 NC_006548.1 + 8789 0.78 0.047949
Target:  5'- uGUCGAUGAGGagcuUUCCGUGGGCgGCCGc -3'
miRNA:   3'- -CGGCUACUCU----AGGGCGCCCGgCGGCu -5'
30507 5' -61.6 NC_006548.1 + 12133 1.1 0.000152
Target:  5'- gGCCGAUGAGAUCCCGCGGGCCGCCGAg -3'
miRNA:   3'- -CGGCUACUCUAGGGCGCCCGGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.