miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30508 5' -52.6 NC_006548.1 + 29293 0.66 0.775154
Target:  5'- cCGCCGACCAGCUcacuuuggcucugCGAUCC-GGUa -3'
miRNA:   3'- cGUGGUUGGUCGGcaa----------GUUAGGuCCG- -5'
30508 5' -52.6 NC_006548.1 + 35419 0.66 0.774103
Target:  5'- uCGCC-ACCGGCUc----AUCCAGGCu -3'
miRNA:   3'- cGUGGuUGGUCGGcaaguUAGGUCCG- -5'
30508 5' -52.6 NC_006548.1 + 6357 0.66 0.767761
Target:  5'- cGUACaCAGCCGGCauaGgcgcaccaggUCAgaacucuggaugaccAUCCGGGCg -3'
miRNA:   3'- -CGUG-GUUGGUCGg--Ca---------AGU---------------UAGGUCCG- -5'
30508 5' -52.6 NC_006548.1 + 32641 0.66 0.763503
Target:  5'- aCGCC-AUCAGCC---CAGUCCGGcGCa -3'
miRNA:   3'- cGUGGuUGGUCGGcaaGUUAGGUC-CG- -5'
30508 5' -52.6 NC_006548.1 + 18180 0.66 0.752756
Target:  5'- gGCAUgGaucACCAgGCCGUccCAggCCAGGUg -3'
miRNA:   3'- -CGUGgU---UGGU-CGGCAa-GUuaGGUCCG- -5'
30508 5' -52.6 NC_006548.1 + 25078 0.66 0.752756
Target:  5'- cCGCC--CCGGCCac-CGAUCCAGGg -3'
miRNA:   3'- cGUGGuuGGUCGGcaaGUUAGGUCCg -5'
30508 5' -52.6 NC_006548.1 + 21918 0.66 0.752756
Target:  5'- -gGCUgaaGACCAGCUuggaGGUCCGGGCc -3'
miRNA:   3'- cgUGG---UUGGUCGGcaagUUAGGUCCG- -5'
30508 5' -52.6 NC_006548.1 + 8008 0.66 0.752756
Target:  5'- aGCGCgCAGCgC-GCCGgaUGAUgCAGGCg -3'
miRNA:   3'- -CGUG-GUUG-GuCGGCaaGUUAgGUCCG- -5'
30508 5' -52.6 NC_006548.1 + 1259 0.66 0.741874
Target:  5'- cGUACCGGCuuugCAGCCGgc---UCCuGGCg -3'
miRNA:   3'- -CGUGGUUG----GUCGGCaaguuAGGuCCG- -5'
30508 5' -52.6 NC_006548.1 + 6708 0.66 0.741874
Target:  5'- aCACaCggUCAGCgGccacgCGAUCCAGGUu -3'
miRNA:   3'- cGUG-GuuGGUCGgCaa---GUUAGGUCCG- -5'
30508 5' -52.6 NC_006548.1 + 3606 0.66 0.741874
Target:  5'- gGUAgCAGCCAGCgccaGUUCAccgCCucGGCg -3'
miRNA:   3'- -CGUgGUUGGUCGg---CAAGUua-GGu-CCG- -5'
30508 5' -52.6 NC_006548.1 + 27909 0.66 0.741874
Target:  5'- uGCAgcUCGGCCAGCgCGUUC---CCGGcGCg -3'
miRNA:   3'- -CGU--GGUUGGUCG-GCAAGuuaGGUC-CG- -5'
30508 5' -52.6 NC_006548.1 + 22735 0.66 0.741874
Target:  5'- cGUGCCGGCCGGCgaugaaGUggcCAGUCCcgaagcGGCg -3'
miRNA:   3'- -CGUGGUUGGUCGg-----CAa--GUUAGGu-----CCG- -5'
30508 5' -52.6 NC_006548.1 + 6084 0.66 0.739682
Target:  5'- cGCGCCAgggguugcgggugAUCAGCacacggucguggaCGUUCAcGUCCGGGa -3'
miRNA:   3'- -CGUGGU-------------UGGUCG-------------GCAAGU-UAGGUCCg -5'
30508 5' -52.6 NC_006548.1 + 12126 0.66 0.735285
Target:  5'- cGCACCGAcCCAGCaugcucggcgccggaCGUUCAcgCUgguGGUg -3'
miRNA:   3'- -CGUGGUU-GGUCG---------------GCAAGUuaGGu--CCG- -5'
30508 5' -52.6 NC_006548.1 + 33959 0.66 0.73087
Target:  5'- gGCACUGGCCuGGCCGgUCAugcgccGUCCAucgucgcucaccGGCc -3'
miRNA:   3'- -CGUGGUUGG-UCGGCaAGU------UAGGU------------CCG- -5'
30508 5' -52.6 NC_006548.1 + 34163 0.66 0.73087
Target:  5'- gGUACCGAgCAGCCGgcauUUGAUCUGcacccGGCu -3'
miRNA:   3'- -CGUGGUUgGUCGGCa---AGUUAGGU-----CCG- -5'
30508 5' -52.6 NC_006548.1 + 2231 0.66 0.73087
Target:  5'- aGCACCugguaGGCgUAGCCGgUCAGcUCCGGcGCc -3'
miRNA:   3'- -CGUGG-----UUG-GUCGGCaAGUU-AGGUC-CG- -5'
30508 5' -52.6 NC_006548.1 + 21379 0.66 0.727547
Target:  5'- cGCAUCAccgcgagugacguuGCC-GCCGUacUCGAccggcgCCAGGCc -3'
miRNA:   3'- -CGUGGU--------------UGGuCGGCA--AGUUa-----GGUCCG- -5'
30508 5' -52.6 NC_006548.1 + 30476 0.67 0.719758
Target:  5'- aCGCCGugCcGCCcaUCAggCCAGGUu -3'
miRNA:   3'- cGUGGUugGuCGGcaAGUuaGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.