miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30509 3' -52.9 NC_006548.1 + 36598 0.66 0.718166
Target:  5'- --cGGCAcCGC-GGUGCucGCGcGGGGAu -3'
miRNA:   3'- auuCCGU-GCGuUCAUGuuCGC-CUCCU- -5'
30509 3' -52.9 NC_006548.1 + 25549 0.66 0.69533
Target:  5'- aUGAGGCAUGCGuagACGucugcccagcGCGGAGGc -3'
miRNA:   3'- -AUUCCGUGCGUucaUGUu---------CGCCUCCu -5'
30509 3' -52.9 NC_006548.1 + 7586 0.67 0.659428
Target:  5'- gAAGGCuuCGcCAAGUuggccgaGCAGGCcGAGGAg -3'
miRNA:   3'- aUUCCGu-GC-GUUCA-------UGUUCGcCUCCU- -5'
30509 3' -52.9 NC_006548.1 + 27098 0.67 0.630257
Target:  5'- ---aGUACGCAGcgccucaaugcugcuGUGCAAGCGG-GGAa -3'
miRNA:   3'- auucCGUGCGUU---------------CAUGUUCGCCuCCU- -5'
30509 3' -52.9 NC_006548.1 + 22537 0.67 0.625586
Target:  5'- --cGGCGCaCAGccGCcGGCGGAGGAg -3'
miRNA:   3'- auuCCGUGcGUUcaUGuUCGCCUCCU- -5'
30509 3' -52.9 NC_006548.1 + 15149 0.67 0.613914
Target:  5'- --cGGaCGCGCAGGccgGCAAGCGcGGcGGAc -3'
miRNA:   3'- auuCC-GUGCGUUCa--UGUUCGC-CU-CCU- -5'
30509 3' -52.9 NC_006548.1 + 19894 0.69 0.509784
Target:  5'- gUGAGGCgGCGUGAGUGCAGGggcuuuuCGGcGGAc -3'
miRNA:   3'- -AUUCCG-UGCGUUCAUGUUC-------GCCuCCU- -5'
30509 3' -52.9 NC_006548.1 + 9022 0.7 0.467349
Target:  5'- --cGGUACGCAgaGGUACAAccGCGGGGu- -3'
miRNA:   3'- auuCCGUGCGU--UCAUGUU--CGCCUCcu -5'
30509 3' -52.9 NC_006548.1 + 33139 0.7 0.456761
Target:  5'- cGGGGCugGCcGGUGCucgggcAGCGGcccgAGGAg -3'
miRNA:   3'- aUUCCGugCGuUCAUGu-----UCGCC----UCCU- -5'
30509 3' -52.9 NC_006548.1 + 19367 0.7 0.446304
Target:  5'- -cAGGuUGCGCAGGUGgccguCGAGCGuGAGGAu -3'
miRNA:   3'- auUCC-GUGCGUUCAU-----GUUCGC-CUCCU- -5'
30509 3' -52.9 NC_006548.1 + 555 0.71 0.386524
Target:  5'- -cAGGCGgcCGCAGauaGCAAGCGGAGGu -3'
miRNA:   3'- auUCCGU--GCGUUca-UGUUCGCCUCCu -5'
30509 3' -52.9 NC_006548.1 + 12866 1.08 0.001066
Target:  5'- gUAAGGCACGCAAGUACAAGCGGAGGAa -3'
miRNA:   3'- -AUUCCGUGCGUUCAUGUUCGCCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.