miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3051 3' -53.9 NC_001493.1 + 30380 0.66 0.960244
Target:  5'- gGGAUCGGUUCAuCGccaugaccGGGGUCCAc- -3'
miRNA:   3'- gCUUAGCUAGGUcGCa-------CCCCAGGUuc -5'
3051 3' -53.9 NC_001493.1 + 12843 0.66 0.952535
Target:  5'- cCGggUCGcGUCCGGgGUcGGGGcgCuCGGGa -3'
miRNA:   3'- -GCuuAGC-UAGGUCgCA-CCCCa-G-GUUC- -5'
3051 3' -53.9 NC_001493.1 + 128397 0.66 0.952535
Target:  5'- cCGggUCGcGUCCGGgGUcGGGGcgCuCGGGa -3'
miRNA:   3'- -GCuuAGC-UAGGUCgCA-CCCCa-G-GUUC- -5'
3051 3' -53.9 NC_001493.1 + 31941 0.67 0.917979
Target:  5'- uGAAcCGAUCCAGgagagaCGgcaugggGGGGUCCAu- -3'
miRNA:   3'- gCUUaGCUAGGUC------GCa------CCCCAGGUuc -5'
3051 3' -53.9 NC_001493.1 + 10760 0.68 0.899491
Target:  5'- cCGGAUCGAgCC-GCGUGGucaGGUCCc-- -3'
miRNA:   3'- -GCUUAGCUaGGuCGCACC---CCAGGuuc -5'
3051 3' -53.9 NC_001493.1 + 126314 0.68 0.899491
Target:  5'- cCGGAUCGAgCC-GCGUGGucaGGUCCc-- -3'
miRNA:   3'- -GCUUAGCUaGGuCGCACC---CCAGGuuc -5'
3051 3' -53.9 NC_001493.1 + 5771 0.68 0.878854
Target:  5'- cCGAgGUCGGcaUCCAGCGgugugggagGGGuGUCCAGc -3'
miRNA:   3'- -GCU-UAGCU--AGGUCGCa--------CCC-CAGGUUc -5'
3051 3' -53.9 NC_001493.1 + 121325 0.68 0.878854
Target:  5'- cCGAgGUCGGcaUCCAGCGgugugggagGGGuGUCCAGc -3'
miRNA:   3'- -GCU-UAGCU--AGGUCGCa--------CCC-CAGGUUc -5'
3051 3' -53.9 NC_001493.1 + 51329 0.69 0.832474
Target:  5'- gGAGUCGAUCCcaacguccgcuccaaAGaauugacccccuccCGUGGcGGUCCAGGu -3'
miRNA:   3'- gCUUAGCUAGG---------------UC--------------GCACC-CCAGGUUC- -5'
3051 3' -53.9 NC_001493.1 + 109398 0.7 0.823059
Target:  5'- uCGGcgCGAUCCAGU--GGGGUUCGGc -3'
miRNA:   3'- -GCUuaGCUAGGUCGcaCCCCAGGUUc -5'
3051 3' -53.9 NC_001493.1 + 24176 0.71 0.758551
Target:  5'- uGAAU-GAaCCGGUugacgGUGGGGUCCAGGu -3'
miRNA:   3'- gCUUAgCUaGGUCG-----CACCCCAGGUUC- -5'
3051 3' -53.9 NC_001493.1 + 23272 0.71 0.748799
Target:  5'- uCGAAUCucUCCcuggGGCGUGuGGUCCAGGu -3'
miRNA:   3'- -GCUUAGcuAGG----UCGCACcCCAGGUUC- -5'
3051 3' -53.9 NC_001493.1 + 30723 1.1 0.00365
Target:  5'- cCGAAUCGAUCCAGCGUGGGGUCCAAGg -3'
miRNA:   3'- -GCUUAGCUAGGUCGCACCCCAGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.