miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3051 5' -59.9 NC_001493.1 + 89985 0.66 0.73325
Target:  5'- cGCGCacGGACCgGcCGGuUGUGCGGUg- -3'
miRNA:   3'- aCGCGc-CUUGGgC-GCC-ACAUGCCGug -5'
3051 5' -59.9 NC_001493.1 + 113687 0.66 0.713818
Target:  5'- --aGgGGcACCUGCGGUuacuGUGgGGCACa -3'
miRNA:   3'- acgCgCCuUGGGCGCCA----CAUgCCGUG- -5'
3051 5' -59.9 NC_001493.1 + 56715 0.66 0.694116
Target:  5'- aGCGCGGcACUCGuCGcGUcgACGGCAg -3'
miRNA:   3'- aCGCGCCuUGGGC-GC-CAcaUGCCGUg -5'
3051 5' -59.9 NC_001493.1 + 54767 0.66 0.694116
Target:  5'- cUGgGCGGGGCCCGUucccGG-GUACGugauCACg -3'
miRNA:   3'- -ACgCGCCUUGGGCG----CCaCAUGCc---GUG- -5'
3051 5' -59.9 NC_001493.1 + 13412 0.66 0.694116
Target:  5'- cGCGCGGucguggGGCCCaCGGUgagggaggcGUGCGGaCAUg -3'
miRNA:   3'- aCGCGCC------UUGGGcGCCA---------CAUGCC-GUG- -5'
3051 5' -59.9 NC_001493.1 + 128966 0.66 0.694116
Target:  5'- cGCGCGGucguggGGCCCaCGGUgagggaggcGUGCGGaCAUg -3'
miRNA:   3'- aCGCGCC------UUGGGcGCCA---------CAUGCC-GUG- -5'
3051 5' -59.9 NC_001493.1 + 28703 0.67 0.65418
Target:  5'- --gGCGGAACUCGgGcGUGUGaaGCGCa -3'
miRNA:   3'- acgCGCCUUGGGCgC-CACAUgcCGUG- -5'
3051 5' -59.9 NC_001493.1 + 124050 0.67 0.643128
Target:  5'- cGCGCGGc-CCCuccacgguucgaaGCGG-GcACGGCGCg -3'
miRNA:   3'- aCGCGCCuuGGG-------------CGCCaCaUGCCGUG- -5'
3051 5' -59.9 NC_001493.1 + 8495 0.67 0.634077
Target:  5'- cGCGCGGc-CCCuccacguucgaaGCGG-GcACGGCGCg -3'
miRNA:   3'- aCGCGCCuuGGG------------CGCCaCaUGCCGUG- -5'
3051 5' -59.9 NC_001493.1 + 39937 0.68 0.60393
Target:  5'- cGCGCauauguacacuGGAACCUGCGG-GUucACgGGCAUu -3'
miRNA:   3'- aCGCG-----------CCUUGGGCGCCaCA--UG-CCGUG- -5'
3051 5' -59.9 NC_001493.1 + 23688 0.68 0.60393
Target:  5'- gGCGCGcucGCCUGUGGUGUgGCGGgugcCGCg -3'
miRNA:   3'- aCGCGCcu-UGGGCGCCACA-UGCC----GUG- -5'
3051 5' -59.9 NC_001493.1 + 113583 0.68 0.60393
Target:  5'- cGUGUGGAACCauCGgGGUGgucGCGGUg- -3'
miRNA:   3'- aCGCGCCUUGG--GCgCCACa--UGCCGug -5'
3051 5' -59.9 NC_001493.1 + 97296 0.68 0.593912
Target:  5'- --aGCGGAAgaUCGCGGUGUuacuCGGCGa -3'
miRNA:   3'- acgCGCCUUg-GGCGCCACAu---GCCGUg -5'
3051 5' -59.9 NC_001493.1 + 62801 0.68 0.583921
Target:  5'- --gGCGaAGCCCGCGGgagccaACGGCACc -3'
miRNA:   3'- acgCGCcUUGGGCGCCaca---UGCCGUG- -5'
3051 5' -59.9 NC_001493.1 + 62675 0.68 0.583921
Target:  5'- --gGCGaAGCCCGCGGgagccaACGGCACc -3'
miRNA:   3'- acgCGCcUUGGGCGCCaca---UGCCGUG- -5'
3051 5' -59.9 NC_001493.1 + 62717 0.68 0.583921
Target:  5'- --gGCGaAGCCCGCGGgagccaACGGCACc -3'
miRNA:   3'- acgCGCcUUGGGCGCCaca---UGCCGUG- -5'
3051 5' -59.9 NC_001493.1 + 62759 0.68 0.583921
Target:  5'- --gGCGaAGCCCGCGGgagccaACGGCACc -3'
miRNA:   3'- acgCGCcUUGGGCGCCaca---UGCCGUG- -5'
3051 5' -59.9 NC_001493.1 + 63302 0.68 0.564046
Target:  5'- --gGCGaAGCCCGCGGgagcGaACGGCACc -3'
miRNA:   3'- acgCGCcUUGGGCGCCa---CaUGCCGUG- -5'
3051 5' -59.9 NC_001493.1 + 64278 0.68 0.564046
Target:  5'- gGgGUGGGAguCUCGuUGGUGUACGaGCGCa -3'
miRNA:   3'- aCgCGCCUU--GGGC-GCCACAUGC-CGUG- -5'
3051 5' -59.9 NC_001493.1 + 110738 0.7 0.450094
Target:  5'- cGUGCGGGACCuCGuCGGUacccucGCGGCAa -3'
miRNA:   3'- aCGCGCCUUGG-GC-GCCAca----UGCCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.