miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30510 5' -55.4 NC_006548.1 + 29661 0.66 0.539355
Target:  5'- cGCaaGACuggCUGCGGCUcccugaaugGCAGCcGCACCa -3'
miRNA:   3'- aCGagUUG---GACGUCGA---------CGUCG-UGUGG- -5'
30510 5' -55.4 NC_006548.1 + 7475 0.66 0.539355
Target:  5'- aGUUCGACCUGC--CUGCAGagcuugguCGCgACCa -3'
miRNA:   3'- aCGAGUUGGACGucGACGUC--------GUG-UGG- -5'
30510 5' -55.4 NC_006548.1 + 9060 0.66 0.539355
Target:  5'- cGCUCGcCCUGUgcauccauugagGGCUGCguggAGCACGgUa -3'
miRNA:   3'- aCGAGUuGGACG------------UCGACG----UCGUGUgG- -5'
30510 5' -55.4 NC_006548.1 + 22602 0.66 0.528224
Target:  5'- gGCUCuccuccGCCgGCGGCUGU---GCGCCg -3'
miRNA:   3'- aCGAGu-----UGGaCGUCGACGucgUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 2334 0.66 0.528224
Target:  5'- cGCUUcguuCCUGUucgucGGCUGCgcGGCgGCGCCg -3'
miRNA:   3'- aCGAGuu--GGACG-----UCGACG--UCG-UGUGG- -5'
30510 5' -55.4 NC_006548.1 + 14346 0.66 0.573184
Target:  5'- cUGCcCAGCCgUGCAGCcgUGCAuCGCuacgGCCa -3'
miRNA:   3'- -ACGaGUUGG-ACGUCG--ACGUcGUG----UGG- -5'
30510 5' -55.4 NC_006548.1 + 17441 0.67 0.493222
Target:  5'- cGUcCGACCcaGCAGCggcgauggcgccGCAGCugGCCg -3'
miRNA:   3'- aCGaGUUGGa-CGUCGa-----------CGUCGugUGG- -5'
30510 5' -55.4 NC_006548.1 + 17186 0.67 0.463493
Target:  5'- cGUUCAACCU-CGGCccgGCccguuGGCugACCg -3'
miRNA:   3'- aCGAGUUGGAcGUCGa--CG-----UCGugUGG- -5'
30510 5' -55.4 NC_006548.1 + 18424 0.67 0.484636
Target:  5'- -aCUCAACCaGCAGCuucUGCAGa--ACCg -3'
miRNA:   3'- acGAGUUGGaCGUCG---ACGUCgugUGG- -5'
30510 5' -55.4 NC_006548.1 + 32853 0.67 0.463493
Target:  5'- cGCUU-GCCaGCAGCUGgaugucCGGCcACACCg -3'
miRNA:   3'- aCGAGuUGGaCGUCGAC------GUCG-UGUGG- -5'
30510 5' -55.4 NC_006548.1 + 36003 0.67 0.463493
Target:  5'- aGCUCcAggUGCGGCUcgauCGGCGCGCCu -3'
miRNA:   3'- aCGAGuUggACGUCGAc---GUCGUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 32802 0.67 0.463493
Target:  5'- cGCccCAGCCUGCaaGGCUGaggucgaggAGCACGCg -3'
miRNA:   3'- aCGa-GUUGGACG--UCGACg--------UCGUGUGg -5'
30510 5' -55.4 NC_006548.1 + 29613 0.67 0.474005
Target:  5'- aGUUCcGCCUGCGGUggaaAGCGCuCCu -3'
miRNA:   3'- aCGAGuUGGACGUCGacg-UCGUGuGG- -5'
30510 5' -55.4 NC_006548.1 + 3877 0.67 0.484636
Target:  5'- aGCUgCAugC-GgAGCUGCAGUGCAUg -3'
miRNA:   3'- aCGA-GUugGaCgUCGACGUCGUGUGg -5'
30510 5' -55.4 NC_006548.1 + 11754 0.67 0.484636
Target:  5'- cUGgUCAugC-GCGGCgcGCGGCgGCGCCg -3'
miRNA:   3'- -ACgAGUugGaCGUCGa-CGUCG-UGUGG- -5'
30510 5' -55.4 NC_006548.1 + 4252 0.67 0.4943
Target:  5'- gUGCUCGAUC-GcCGGCUGUucauucgugcggaAGaCGCACCa -3'
miRNA:   3'- -ACGAGUUGGaC-GUCGACG-------------UC-GUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 26486 0.67 0.50623
Target:  5'- uUGCUCAGCC-GCAGgUG-AGC-CGCg -3'
miRNA:   3'- -ACGAGUUGGaCGUCgACgUCGuGUGg -5'
30510 5' -55.4 NC_006548.1 + 26372 0.67 0.50623
Target:  5'- cGCUCug-CUGCAGgUaguaaaagcgcGCGGCGCGCUg -3'
miRNA:   3'- aCGAGuugGACGUCgA-----------CGUCGUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 5528 0.67 0.50623
Target:  5'- cGgUCGACCUG-AGCccgGCGGCGuCGCUc -3'
miRNA:   3'- aCgAGUUGGACgUCGa--CGUCGU-GUGG- -5'
30510 5' -55.4 NC_006548.1 + 12933 0.67 0.463493
Target:  5'- gGCUCGcGCUgagcGCGGUgcugUGCGGCGCAgCCg -3'
miRNA:   3'- aCGAGU-UGGa---CGUCG----ACGUCGUGU-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.