miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30510 5' -55.4 NC_006548.1 + 7475 0.66 0.539355
Target:  5'- aGUUCGACCUGC--CUGCAGagcuugguCGCgACCa -3'
miRNA:   3'- aCGAGUUGGACGucGACGUC--------GUG-UGG- -5'
30510 5' -55.4 NC_006548.1 + 7749 0.66 0.572047
Target:  5'- cGCagAGCCUugcGCAGCUcGCGGCagcucauGCGCUc -3'
miRNA:   3'- aCGagUUGGA---CGUCGA-CGUCG-------UGUGG- -5'
30510 5' -55.4 NC_006548.1 + 8734 0.66 0.51718
Target:  5'- aGgaCggUCUGCAaCUGCuGCACAUCc -3'
miRNA:   3'- aCgaGuuGGACGUcGACGuCGUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 9060 0.66 0.539355
Target:  5'- cGCUCGcCCUGUgcauccauugagGGCUGCguggAGCACGgUa -3'
miRNA:   3'- aCGAGUuGGACG------------UCGACG----UCGUGUgG- -5'
30510 5' -55.4 NC_006548.1 + 9309 0.66 0.561842
Target:  5'- aUGCUCAGCCggGCGauaUGUGGCAaauGCCc -3'
miRNA:   3'- -ACGAGUUGGa-CGUcg-ACGUCGUg--UGG- -5'
30510 5' -55.4 NC_006548.1 + 9757 0.75 0.149285
Target:  5'- aGCUCGGCCugaagccuucUGUAGCUGCuGCgugaggaACACCg -3'
miRNA:   3'- aCGAGUUGG----------ACGUCGACGuCG-------UGUGG- -5'
30510 5' -55.4 NC_006548.1 + 10598 0.68 0.412869
Target:  5'- aUGCUCGGCCUGUucuaaccaauccAGCUagGguGCGgACUu -3'
miRNA:   3'- -ACGAGUUGGACG------------UCGA--CguCGUgUGG- -5'
30510 5' -55.4 NC_006548.1 + 11605 0.69 0.393596
Target:  5'- gGCgu--CCUGCAGgaGCAGgAUGCCc -3'
miRNA:   3'- aCGaguuGGACGUCgaCGUCgUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 11668 0.66 0.550563
Target:  5'- aUGggCAuCCUGCucCUGCAGgACGCCc -3'
miRNA:   3'- -ACgaGUuGGACGucGACGUCgUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 11754 0.67 0.484636
Target:  5'- cUGgUCAugC-GCGGCgcGCGGCgGCGCCg -3'
miRNA:   3'- -ACgAGUugGaCGUCGa-CGUCG-UGUGG- -5'
30510 5' -55.4 NC_006548.1 + 11964 0.69 0.38418
Target:  5'- --aUCAGCgaGCGGC-GCAGCcagGCACCu -3'
miRNA:   3'- acgAGUUGgaCGUCGaCGUCG---UGUGG- -5'
30510 5' -55.4 NC_006548.1 + 12151 0.71 0.275879
Target:  5'- cGC-CGGCCaGCAGCaggagcauCAGCGCACCg -3'
miRNA:   3'- aCGaGUUGGaCGUCGac------GUCGUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 12933 0.67 0.463493
Target:  5'- gGCUCGcGCUgagcGCGGUgcugUGCGGCGCAgCCg -3'
miRNA:   3'- aCGAGU-UGGa---CGUCG----ACGUCGUGU-GG- -5'
30510 5' -55.4 NC_006548.1 + 13036 1.12 0.00025
Target:  5'- cUGCUCAACCUGCAGCUGCAGCACACCa -3'
miRNA:   3'- -ACGAGUUGGACGUCGACGUCGUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 13108 0.69 0.38418
Target:  5'- cGUUCguugguGugCUGCAGCUGCagguugagcAGCGCAgCg -3'
miRNA:   3'- aCGAG------UugGACGUCGACG---------UCGUGUgG- -5'
30510 5' -55.4 NC_006548.1 + 13199 0.73 0.214399
Target:  5'- cUGCUguACCUGCAGCaguUGCuccucggccugguuGGCGCGCg -3'
miRNA:   3'- -ACGAguUGGACGUCG---ACG--------------UCGUGUGg -5'
30510 5' -55.4 NC_006548.1 + 13315 0.66 0.539355
Target:  5'- uUGC-CcGCC-GCAGgaGC-GCGCGCCg -3'
miRNA:   3'- -ACGaGuUGGaCGUCgaCGuCGUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 13432 0.66 0.561842
Target:  5'- aGCUCGGCgU-CAGaaccgGCGGCGgGCCa -3'
miRNA:   3'- aCGAGUUGgAcGUCga---CGUCGUgUGG- -5'
30510 5' -55.4 NC_006548.1 + 14346 0.66 0.573184
Target:  5'- cUGCcCAGCCgUGCAGCcgUGCAuCGCuacgGCCa -3'
miRNA:   3'- -ACGaGUUGG-ACGUCG--ACGUcGUG----UGG- -5'
30510 5' -55.4 NC_006548.1 + 14383 0.68 0.422721
Target:  5'- aGCUgGAgCgGCGGCUgGCGGCaauucgugccaGCACCg -3'
miRNA:   3'- aCGAgUUgGaCGUCGA-CGUCG-----------UGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.