miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30510 5' -55.4 NC_006548.1 + 29961 0.68 0.442843
Target:  5'- cUGCUCcgGGCCU--GGCUGCuuCGCGCCu -3'
miRNA:   3'- -ACGAG--UUGGAcgUCGACGucGUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 909 0.68 0.432714
Target:  5'- cUGCUCAGCCUGgcgcaGGUUGagauccCGCGCCg -3'
miRNA:   3'- -ACGAGUUGGACg----UCGACguc---GUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 32743 0.68 0.422721
Target:  5'- -cCUCAGCCuUGCAgGCUGgGGCGgGCg -3'
miRNA:   3'- acGAGUUGG-ACGU-CGACgUCGUgUGg -5'
30510 5' -55.4 NC_006548.1 + 20995 0.68 0.422721
Target:  5'- gUGCUCAcGCCauUGCAGC-GCgAGCGCAg- -3'
miRNA:   3'- -ACGAGU-UGG--ACGUCGaCG-UCGUGUgg -5'
30510 5' -55.4 NC_006548.1 + 14383 0.68 0.422721
Target:  5'- aGCUgGAgCgGCGGCUgGCGGCaauucgugccaGCACCg -3'
miRNA:   3'- aCGAgUUgGaCGUCGA-CGUCG-----------UGUGG- -5'
30510 5' -55.4 NC_006548.1 + 2661 0.68 0.42173
Target:  5'- gUGCUCAcgACCUGgaCAGCcucgccgauggccUGCAuuGCACGCUg -3'
miRNA:   3'- -ACGAGU--UGGAC--GUCG-------------ACGU--CGUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 27334 0.68 0.412869
Target:  5'- cGCUCGccugGCCgaGCAGgaGCGGCAguugACCg -3'
miRNA:   3'- aCGAGU----UGGa-CGUCgaCGUCGUg---UGG- -5'
30510 5' -55.4 NC_006548.1 + 10598 0.68 0.412869
Target:  5'- aUGCUCGGCCUGUucuaaccaauccAGCUagGguGCGgACUu -3'
miRNA:   3'- -ACGAGUUGGACG------------UCGA--CguCGUgUGG- -5'
30510 5' -55.4 NC_006548.1 + 11605 0.69 0.393596
Target:  5'- gGCgu--CCUGCAGgaGCAGgAUGCCc -3'
miRNA:   3'- aCGaguuGGACGUCgaCGUCgUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 16326 0.69 0.38418
Target:  5'- -aUUCGAuCCUGCAGCgccgugGCGGCAacgACCu -3'
miRNA:   3'- acGAGUU-GGACGUCGa-----CGUCGUg--UGG- -5'
30510 5' -55.4 NC_006548.1 + 20592 0.68 0.413848
Target:  5'- gGCUCuuCCgcagcggcggcagagGCuGCUGCGGCgucgACGCCu -3'
miRNA:   3'- aCGAGuuGGa--------------CGuCGACGUCG----UGUGG- -5'
30510 5' -55.4 NC_006548.1 + 21279 0.68 0.432714
Target:  5'- aUGC-CGAUCaGCAGC-GCAGUGCuACCg -3'
miRNA:   3'- -ACGaGUUGGaCGUCGaCGUCGUG-UGG- -5'
30510 5' -55.4 NC_006548.1 + 1040 0.68 0.433721
Target:  5'- aGCUCGGCCUGCAGgacgaugucuaucgGCAGaaGCugCa -3'
miRNA:   3'- aCGAGUUGGACGUCga------------CGUCg-UGugG- -5'
30510 5' -55.4 NC_006548.1 + 18745 0.68 0.453104
Target:  5'- aGCUCGgccagugacaacGCCUuggGCAGCccUGCGGCGguuguCGCCa -3'
miRNA:   3'- aCGAGU------------UGGA---CGUCG--ACGUCGU-----GUGG- -5'
30510 5' -55.4 NC_006548.1 + 32853 0.67 0.463493
Target:  5'- cGCUU-GCCaGCAGCUGgaugucCGGCcACACCg -3'
miRNA:   3'- aCGAGuUGGaCGUCGAC------GUCG-UGUGG- -5'
30510 5' -55.4 NC_006548.1 + 32802 0.67 0.463493
Target:  5'- cGCccCAGCCUGCaaGGCUGaggucgaggAGCACGCg -3'
miRNA:   3'- aCGa-GUUGGACG--UCGACg--------UCGUGUGg -5'
30510 5' -55.4 NC_006548.1 + 29613 0.67 0.474005
Target:  5'- aGUUCcGCCUGCGGUggaaAGCGCuCCu -3'
miRNA:   3'- aCGAGuUGGACGUCGacg-UCGUGuGG- -5'
30510 5' -55.4 NC_006548.1 + 3877 0.67 0.484636
Target:  5'- aGCUgCAugC-GgAGCUGCAGUGCAUg -3'
miRNA:   3'- aCGA-GUugGaCgUCGACGUCGUGUGg -5'
30510 5' -55.4 NC_006548.1 + 11754 0.67 0.484636
Target:  5'- cUGgUCAugC-GCGGCgcGCGGCgGCGCCg -3'
miRNA:   3'- -ACgAGUugGaCGUCGa-CGUCG-UGUGG- -5'
30510 5' -55.4 NC_006548.1 + 4252 0.67 0.4943
Target:  5'- gUGCUCGAUC-GcCGGCUGUucauucgugcggaAGaCGCACCa -3'
miRNA:   3'- -ACGAGUUGGaC-GUCGACG-------------UC-GUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.