miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30512 5' -58.1 NC_006548.1 + 4653 0.66 0.44582
Target:  5'- uUGCuGCCGUGgAaaagcaccuggaguUcCGCUuCGGCCGGGc -3'
miRNA:   3'- -ACGuCGGCACgU--------------A-GCGAuGCCGGUCU- -5'
30512 5' -58.1 NC_006548.1 + 22588 0.66 0.43887
Target:  5'- gGCGGCUGUGCGccgguaguggUUGgUGCGG-CAGGu -3'
miRNA:   3'- aCGUCGGCACGU----------AGCgAUGCCgGUCU- -5'
30512 5' -58.1 NC_006548.1 + 1087 0.66 0.43887
Target:  5'- cGCAGCUcaGCAUCGCUgACGcCCAa- -3'
miRNA:   3'- aCGUCGGcaCGUAGCGA-UGCcGGUcu -5'
30512 5' -58.1 NC_006548.1 + 29281 0.66 0.429048
Target:  5'- cGCGGCCGgaucGCcaGUUGCcuUGGCCAGc -3'
miRNA:   3'- aCGUCGGCa---CG--UAGCGauGCCGGUCu -5'
30512 5' -58.1 NC_006548.1 + 22303 0.66 0.429048
Target:  5'- gUGguGCCGuUGCGggUGU--CGGCCAGGc -3'
miRNA:   3'- -ACguCGGC-ACGUa-GCGauGCCGGUCU- -5'
30512 5' -58.1 NC_006548.1 + 36439 0.66 0.409801
Target:  5'- cGCGGCUGaGCAgCGCguaguucaucUGCaGGCCGGAc -3'
miRNA:   3'- aCGUCGGCaCGUaGCG----------AUG-CCGGUCU- -5'
30512 5' -58.1 NC_006548.1 + 33962 0.66 0.400382
Target:  5'- cGCAGCUGUaccGUggCGCU-CGGCCGu- -3'
miRNA:   3'- aCGUCGGCA---CGuaGCGAuGCCGGUcu -5'
30512 5' -58.1 NC_006548.1 + 36363 0.66 0.400381
Target:  5'- cUGCAGCUGcgccagaucUGCAUCGCUcaguGCcGCCGcGAg -3'
miRNA:   3'- -ACGUCGGC---------ACGUAGCGA----UGcCGGU-CU- -5'
30512 5' -58.1 NC_006548.1 + 18459 0.66 0.400381
Target:  5'- cGCAGCCGguucGgGUgGCaGCGGCguGGu -3'
miRNA:   3'- aCGUCGGCa---CgUAgCGaUGCCGguCU- -5'
30512 5' -58.1 NC_006548.1 + 7608 0.67 0.391101
Target:  5'- cGCAGCUcUGCcgCGCgcugguCGGCCGu- -3'
miRNA:   3'- aCGUCGGcACGuaGCGau----GCCGGUcu -5'
30512 5' -58.1 NC_006548.1 + 18221 0.67 0.391101
Target:  5'- --gAGCUG-GCAUCGCUgggcaaggACGGcCCGGAc -3'
miRNA:   3'- acgUCGGCaCGUAGCGA--------UGCC-GGUCU- -5'
30512 5' -58.1 NC_006548.1 + 28530 0.67 0.391101
Target:  5'- cGCAGUCcUGC-UCgGCgcCGGCCAGGu -3'
miRNA:   3'- aCGUCGGcACGuAG-CGauGCCGGUCU- -5'
30512 5' -58.1 NC_006548.1 + 35084 0.67 0.381962
Target:  5'- aGCgaaAGCCGacaguuUGCGcuUUGCUACGGCCGc- -3'
miRNA:   3'- aCG---UCGGC------ACGU--AGCGAUGCCGGUcu -5'
30512 5' -58.1 NC_006548.1 + 33756 0.67 0.372966
Target:  5'- aGCGGUCG---GUCGCcgAUGGCCAGGc -3'
miRNA:   3'- aCGUCGGCacgUAGCGa-UGCCGGUCU- -5'
30512 5' -58.1 NC_006548.1 + 1937 0.67 0.364115
Target:  5'- gUGCAGCCGcGCG-CGCUugcccGCGGCa--- -3'
miRNA:   3'- -ACGUCGGCaCGUaGCGA-----UGCCGgucu -5'
30512 5' -58.1 NC_006548.1 + 21270 0.67 0.364115
Target:  5'- aGCAGCgcaGUGCuaccggcaGCcuggGCGGCCAGGc -3'
miRNA:   3'- aCGUCGg--CACGuag-----CGa---UGCCGGUCU- -5'
30512 5' -58.1 NC_006548.1 + 26340 0.67 0.355411
Target:  5'- gGCGGCCGg--GUCG--AUGGCCAGAg -3'
miRNA:   3'- aCGUCGGCacgUAGCgaUGCCGGUCU- -5'
30512 5' -58.1 NC_006548.1 + 33364 0.67 0.355411
Target:  5'- cGCAGCgccGCAU-GCUccucGCGGCCGGAg -3'
miRNA:   3'- aCGUCGgcaCGUAgCGA----UGCCGGUCU- -5'
30512 5' -58.1 NC_006548.1 + 36955 0.67 0.346854
Target:  5'- aGCAGCCGguUGCGgugCGCccacgacACGGUCAGc -3'
miRNA:   3'- aCGUCGGC--ACGUa--GCGa------UGCCGGUCu -5'
30512 5' -58.1 NC_006548.1 + 16042 0.68 0.327738
Target:  5'- cGCAGCCGU-CGucugcuuggugaccUCGCgcaagGCGGCgCGGAu -3'
miRNA:   3'- aCGUCGGCAcGU--------------AGCGa----UGCCG-GUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.