miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30512 5' -58.1 NC_006548.1 + 1190 0.68 0.322077
Target:  5'- gGCGuuGCUG-GCcgCGCagACGGCCAGGc -3'
miRNA:   3'- aCGU--CGGCaCGuaGCGa-UGCCGGUCU- -5'
30512 5' -58.1 NC_006548.1 + 32961 0.68 0.322077
Target:  5'- gGCGcGCCcgGUGCAgcggCGCUGgcCGGCCGGc -3'
miRNA:   3'- aCGU-CGG--CACGUa---GCGAU--GCCGGUCu -5'
30512 5' -58.1 NC_006548.1 + 13905 0.68 0.314117
Target:  5'- cGCAGCUGcGCGUUuuccaGCUucACGGCCAa- -3'
miRNA:   3'- aCGUCGGCaCGUAG-----CGA--UGCCGGUcu -5'
30512 5' -58.1 NC_006548.1 + 18779 0.69 0.2867
Target:  5'- cUGCGGCUGggcgaggaucugcgGCAgggUCGCUAgcuCGGCCAGu -3'
miRNA:   3'- -ACGUCGGCa-------------CGU---AGCGAU---GCCGGUCu -5'
30512 5' -58.1 NC_006548.1 + 36065 0.69 0.281593
Target:  5'- cGCAGCCGgaaGCGcgggaucgaacugaUCGUccUACGcGCCGGAa -3'
miRNA:   3'- aCGUCGGCa--CGU--------------AGCG--AUGC-CGGUCU- -5'
30512 5' -58.1 NC_006548.1 + 24521 0.69 0.269491
Target:  5'- gGCGGUCuUGCcgCGCUgcaaGCGGCCAu- -3'
miRNA:   3'- aCGUCGGcACGuaGCGA----UGCCGGUcu -5'
30512 5' -58.1 NC_006548.1 + 17237 0.69 0.261886
Target:  5'- cGCAGCCGccacgggUGUAUCGCgugauCGaagaGCCAGAa -3'
miRNA:   3'- aCGUCGGC-------ACGUAGCGau---GC----CGGUCU- -5'
30512 5' -58.1 NC_006548.1 + 6924 0.7 0.242673
Target:  5'- gGUAGCUGUGCAgCGC-GCGGCUg-- -3'
miRNA:   3'- aCGUCGGCACGUaGCGaUGCCGGucu -5'
30512 5' -58.1 NC_006548.1 + 27527 0.7 0.230117
Target:  5'- cUGCuguucGCCG-GCAUCGCcgguUACGGCCuGGc -3'
miRNA:   3'- -ACGu----CGGCaCGUAGCG----AUGCCGGuCU- -5'
30512 5' -58.1 NC_006548.1 + 34156 0.72 0.16088
Target:  5'- aGCAGCCG-GCAUUugaucugcacccgGCUGuCGGCCGGc -3'
miRNA:   3'- aCGUCGGCaCGUAG-------------CGAU-GCCGGUCu -5'
30512 5' -58.1 NC_006548.1 + 37318 0.73 0.156887
Target:  5'- gGCAGCCGgucgucaaggggcGCGUCGCcacgcugccgacuaGCGGCCAGGc -3'
miRNA:   3'- aCGUCGGCa------------CGUAGCGa-------------UGCCGGUCU- -5'
30512 5' -58.1 NC_006548.1 + 17543 0.73 0.152555
Target:  5'- aGUuGCCGacgacaggcUGCAUCGCUuCGGCCAGc -3'
miRNA:   3'- aCGuCGGC---------ACGUAGCGAuGCCGGUCu -5'
30512 5' -58.1 NC_006548.1 + 22154 0.77 0.076542
Target:  5'- cGCGGCUGaaCAUCGCU-CGGCCGGGg -3'
miRNA:   3'- aCGUCGGCacGUAGCGAuGCCGGUCU- -5'
30512 5' -58.1 NC_006548.1 + 14356 1.09 0.000283
Target:  5'- gUGCAGCCGUGCAUCGCUACGGCCAGAa -3'
miRNA:   3'- -ACGUCGGCACGUAGCGAUGCCGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.