miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30513 3' -54.6 NC_006548.1 + 4432 0.66 0.694339
Target:  5'- uCAGggGGGUgugagaugaacgucgUACCGAUCaCuGGCCGCc -3'
miRNA:   3'- cGUCuaCCUA---------------GUGGCUAG-GcUCGGCG- -5'
30513 3' -54.6 NC_006548.1 + 22301 0.66 0.678763
Target:  5'- cCGGuucGAUCGCCGAUCCGAacaucgGuCUGCg -3'
miRNA:   3'- cGUCuacCUAGUGGCUAGGCU------C-GGCG- -5'
30513 3' -54.6 NC_006548.1 + 35306 0.66 0.66758
Target:  5'- cCAGucgaGGAuUCACCGGuuggUCCGGGgCGCc -3'
miRNA:   3'- cGUCua--CCU-AGUGGCU----AGGCUCgGCG- -5'
30513 3' -54.6 NC_006548.1 + 8109 0.66 0.66758
Target:  5'- cGCGGAUGcGGUCguaagggagGCCGucgCCGAaCUGCg -3'
miRNA:   3'- -CGUCUAC-CUAG---------UGGCua-GGCUcGGCG- -5'
30513 3' -54.6 NC_006548.1 + 14923 0.66 0.656362
Target:  5'- uGCcGGUGaGcgCACUGcugCCGAGuCCGCg -3'
miRNA:   3'- -CGuCUAC-CuaGUGGCua-GGCUC-GGCG- -5'
30513 3' -54.6 NC_006548.1 + 1156 0.66 0.656362
Target:  5'- cGCGaauUGGGcgUCAgCGAUgCUGAGCUGCg -3'
miRNA:   3'- -CGUcu-ACCU--AGUgGCUA-GGCUCGGCG- -5'
30513 3' -54.6 NC_006548.1 + 32477 0.66 0.656362
Target:  5'- aCGGAUGGAcCGCCGGUagUgGAcGCgCGCa -3'
miRNA:   3'- cGUCUACCUaGUGGCUA--GgCU-CG-GCG- -5'
30513 3' -54.6 NC_006548.1 + 31717 0.66 0.645121
Target:  5'- --cGgcGGGUCAUCGggCCaGGCCGUg -3'
miRNA:   3'- cguCuaCCUAGUGGCuaGGcUCGGCG- -5'
30513 3' -54.6 NC_006548.1 + 19935 0.66 0.643996
Target:  5'- --cGGUGGAguUCACCGAggccaUCCuGAggagaucGCCGCg -3'
miRNA:   3'- cguCUACCU--AGUGGCU-----AGG-CU-------CGGCG- -5'
30513 3' -54.6 NC_006548.1 + 21253 0.67 0.622612
Target:  5'- gGCAGccUGGGcggCcagGCCG-UCCGAGCUGCc -3'
miRNA:   3'- -CGUCu-ACCUa--G---UGGCuAGGCUCGGCG- -5'
30513 3' -54.6 NC_006548.1 + 22704 0.67 0.600138
Target:  5'- cCAGAUcGG-CACCGAUCU--GCCGCa -3'
miRNA:   3'- cGUCUAcCUaGUGGCUAGGcuCGGCG- -5'
30513 3' -54.6 NC_006548.1 + 29407 0.67 0.599016
Target:  5'- uGCAGgcGGucagccgAUCGCUGG-CCGAcguuGCCGCg -3'
miRNA:   3'- -CGUCuaCC-------UAGUGGCUaGGCU----CGGCG- -5'
30513 3' -54.6 NC_006548.1 + 3283 0.67 0.588939
Target:  5'- uGCAGGU-GAUCACCagcucGAUCaggcucgggucaUGAGCUGCa -3'
miRNA:   3'- -CGUCUAcCUAGUGG-----CUAG------------GCUCGGCG- -5'
30513 3' -54.6 NC_006548.1 + 14098 0.67 0.588939
Target:  5'- gGCAaGUGGuUCGCCGAUuuGAcCCGg -3'
miRNA:   3'- -CGUcUACCuAGUGGCUAggCUcGGCg -5'
30513 3' -54.6 NC_006548.1 + 32593 0.67 0.588939
Target:  5'- gGCuGAUGGcgugcaggaGUCACUGGagugguugaCCGAGCUGCu -3'
miRNA:   3'- -CGuCUACC---------UAGUGGCUa--------GGCUCGGCG- -5'
30513 3' -54.6 NC_006548.1 + 30499 0.67 0.588939
Target:  5'- -gGGcgGGAUCGCCccagcauuGAacgCCGuGCCGCc -3'
miRNA:   3'- cgUCuaCCUAGUGG--------CUa--GGCuCGGCG- -5'
30513 3' -54.6 NC_006548.1 + 20404 0.67 0.577778
Target:  5'- cGCAGGcggcgcaGGAUC-UCGGUCaGAGCCGUc -3'
miRNA:   3'- -CGUCUa------CCUAGuGGCUAGgCUCGGCG- -5'
30513 3' -54.6 NC_006548.1 + 27974 0.67 0.577778
Target:  5'- cGCGccgGGAacgCGCUGG-CCGAGCUGCa -3'
miRNA:   3'- -CGUcuaCCUa--GUGGCUaGGCUCGGCG- -5'
30513 3' -54.6 NC_006548.1 + 16986 0.68 0.555605
Target:  5'- gGCGGAgcugcUGGAa-GCCGGgcgcUCCGGGaCCGCc -3'
miRNA:   3'- -CGUCU-----ACCUagUGGCU----AGGCUC-GGCG- -5'
30513 3' -54.6 NC_006548.1 + 26093 0.69 0.512083
Target:  5'- cGCAGGUGGGgcggCACUGuucuUCCuacGGCCGg -3'
miRNA:   3'- -CGUCUACCUa---GUGGCu---AGGc--UCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.