miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30515 3' -55.9 NC_006548.1 + 16720 0.66 0.561042
Target:  5'- -aGCaggCGCAGGCCGCcgucCUGGUcauAGCg -3'
miRNA:   3'- uaUGg--GCGUCUGGCGauu-GACCG---UCG- -5'
30515 3' -55.9 NC_006548.1 + 36250 0.66 0.549856
Target:  5'- -gACCCGCAGgcucaucgaggcGCCGUaccgUGAUcucgcGGCGGCa -3'
miRNA:   3'- uaUGGGCGUC------------UGGCG----AUUGa----CCGUCG- -5'
30515 3' -55.9 NC_006548.1 + 24823 0.66 0.549856
Target:  5'- ---aCCGcCGGAgCGCUAcauccuGCUGGaCGGCa -3'
miRNA:   3'- uaugGGC-GUCUgGCGAU------UGACC-GUCG- -5'
30515 3' -55.9 NC_006548.1 + 24734 0.66 0.549856
Target:  5'- cGUACCCaagacCAGuuCCGCgGGCgUGGUAGCa -3'
miRNA:   3'- -UAUGGGc----GUCu-GGCGaUUG-ACCGUCG- -5'
30515 3' -55.9 NC_006548.1 + 21161 0.66 0.53874
Target:  5'- -cGCCCGCcGuAUCGUgauccaUGGCAGCu -3'
miRNA:   3'- uaUGGGCGuC-UGGCGauug--ACCGUCG- -5'
30515 3' -55.9 NC_006548.1 + 6775 0.66 0.509137
Target:  5'- -cACCUGUAGGCCGCUAGCcuucuugUucgccccaggcuucaGGUAGUa -3'
miRNA:   3'- uaUGGGCGUCUGGCGAUUG-------A---------------CCGUCG- -5'
30515 3' -55.9 NC_006548.1 + 29280 0.66 0.505889
Target:  5'- aAUACCCgGCuGGCCGCcGACcagcucacuuUGGCucuGCg -3'
miRNA:   3'- -UAUGGG-CGuCUGGCGaUUG----------ACCGu--CG- -5'
30515 3' -55.9 NC_006548.1 + 36282 0.66 0.505889
Target:  5'- -aACCCGCGGGgUGCgguCgGGCGGg -3'
miRNA:   3'- uaUGGGCGUCUgGCGauuGaCCGUCg -5'
30515 3' -55.9 NC_006548.1 + 5970 0.67 0.495128
Target:  5'- -gGCCCGCAaaGCUGUUGaccaACUGGCcuauGGCg -3'
miRNA:   3'- uaUGGGCGUc-UGGCGAU----UGACCG----UCG- -5'
30515 3' -55.9 NC_006548.1 + 19868 0.67 0.495128
Target:  5'- --uUCgGCGGACCGaaAAUUGGUGGCu -3'
miRNA:   3'- uauGGgCGUCUGGCgaUUGACCGUCG- -5'
30515 3' -55.9 NC_006548.1 + 35809 0.67 0.495128
Target:  5'- --uCCCgaGCAGcCCGCUGuccucaucgaauACgGGCAGCg -3'
miRNA:   3'- uauGGG--CGUCuGGCGAU------------UGaCCGUCG- -5'
30515 3' -55.9 NC_006548.1 + 29185 0.67 0.485532
Target:  5'- cUGCCgCGCGGccaguUCGCUGACgagaccggccugcugGGCGGCc -3'
miRNA:   3'- uAUGG-GCGUCu----GGCGAUUGa--------------CCGUCG- -5'
30515 3' -55.9 NC_006548.1 + 32142 0.67 0.473926
Target:  5'- gAUGCCgGCAacGACCGCUucGACcGGCcgaGGUa -3'
miRNA:   3'- -UAUGGgCGU--CUGGCGA--UUGaCCG---UCG- -5'
30515 3' -55.9 NC_006548.1 + 35237 0.67 0.473926
Target:  5'- -cGCCC-CGGACCaaccgGUgaauccucGACUGGCGGCg -3'
miRNA:   3'- uaUGGGcGUCUGG-----CGa-------UUGACCGUCG- -5'
30515 3' -55.9 NC_006548.1 + 20897 0.67 0.473926
Target:  5'- -aGCCgGCGG-CCGagguGCUGcGCAGCu -3'
miRNA:   3'- uaUGGgCGUCuGGCgau-UGAC-CGUCG- -5'
30515 3' -55.9 NC_006548.1 + 29511 0.67 0.463497
Target:  5'- --cCCCGCAGuugccuucuggGCCaGCU-GCUGcGCGGCa -3'
miRNA:   3'- uauGGGCGUC-----------UGG-CGAuUGAC-CGUCG- -5'
30515 3' -55.9 NC_006548.1 + 4804 0.67 0.463497
Target:  5'- -cGCCUGCgugaguuggaGGACgGCUucaccaAGCUGGuCAGCa -3'
miRNA:   3'- uaUGGGCG----------UCUGgCGA------UUGACC-GUCG- -5'
30515 3' -55.9 NC_006548.1 + 4636 0.67 0.452166
Target:  5'- -cACCUGgAGuuCCGCUucggccgGGCUGGCAaGCa -3'
miRNA:   3'- uaUGGGCgUCu-GGCGA-------UUGACCGU-CG- -5'
30515 3' -55.9 NC_006548.1 + 6454 0.67 0.443008
Target:  5'- -aACCCGC--GCCGCgc-CUGGC-GCg -3'
miRNA:   3'- uaUGGGCGucUGGCGauuGACCGuCG- -5'
30515 3' -55.9 NC_006548.1 + 12933 0.67 0.443008
Target:  5'- -gGCUCGCGcuGAgCGCgguGCUGuGCGGCg -3'
miRNA:   3'- uaUGGGCGU--CUgGCGau-UGAC-CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.