miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30515 5' -57.7 NC_006548.1 + 25928 0.66 0.508332
Target:  5'- aCGGCCcGCgcgGgccaGCAGGCGgUGACAu -3'
miRNA:   3'- -GCCGGcUGa--Caag-CGUCCGCaGCUGU- -5'
30515 5' -57.7 NC_006548.1 + 1171 0.66 0.487548
Target:  5'- aCGGCCaGGCUcGcUCGCgaauuGGGCGUCaGCGa -3'
miRNA:   3'- -GCCGG-CUGA-CaAGCG-----UCCGCAGcUGU- -5'
30515 5' -57.7 NC_006548.1 + 19472 0.66 0.486519
Target:  5'- uCGGCCGGgaGUUCGUgcccagaAGGCG-CaGCAa -3'
miRNA:   3'- -GCCGGCUgaCAAGCG-------UCCGCaGcUGU- -5'
30515 5' -57.7 NC_006548.1 + 28273 0.66 0.477307
Target:  5'- gCGGCCaaaggGgcUGCGGGCGUCGuCAa -3'
miRNA:   3'- -GCCGGcuga-CaaGCGUCCGCAGCuGU- -5'
30515 5' -57.7 NC_006548.1 + 4498 0.67 0.41827
Target:  5'- gCGGCCG-CUGgugCuCAGGCGcUCGAUc -3'
miRNA:   3'- -GCCGGCuGACaa-GcGUCCGC-AGCUGu -5'
30515 5' -57.7 NC_006548.1 + 27524 0.67 0.41827
Target:  5'- gGGCUG-CUGUUCGCcGGCaUCGcCGg -3'
miRNA:   3'- gCCGGCuGACAAGCGuCCGcAGCuGU- -5'
30515 5' -57.7 NC_006548.1 + 26986 0.67 0.408867
Target:  5'- uGGCCGuaaGCUGa--GCA-GCGUCGGCGa -3'
miRNA:   3'- gCCGGC---UGACaagCGUcCGCAGCUGU- -5'
30515 5' -57.7 NC_006548.1 + 16167 0.67 0.408867
Target:  5'- cCGGCgGACUGauagUCGaUGGGCauGUCGACc -3'
miRNA:   3'- -GCCGgCUGACa---AGC-GUCCG--CAGCUGu -5'
30515 5' -57.7 NC_006548.1 + 19770 0.68 0.363892
Target:  5'- aCGGCCuaGGCgcUUCGagAGGCGUCGAUAc -3'
miRNA:   3'- -GCCGG--CUGacAAGCg-UCCGCAGCUGU- -5'
30515 5' -57.7 NC_006548.1 + 20577 0.69 0.314609
Target:  5'- gCGGCagaGGCUGc-UGC-GGCGUCGACGc -3'
miRNA:   3'- -GCCGg--CUGACaaGCGuCCGCAGCUGU- -5'
30515 5' -57.7 NC_006548.1 + 36593 0.7 0.284654
Target:  5'- gCGGCCGGCaccgcgGUgcucgCGCGGggauGCGUCGAUAc -3'
miRNA:   3'- -GCCGGCUGa-----CAa----GCGUC----CGCAGCUGU- -5'
30515 5' -57.7 NC_006548.1 + 21741 0.7 0.277527
Target:  5'- aCGGCCugGACgcgccgGUgcCGCAGGCGgauaUCGACAa -3'
miRNA:   3'- -GCCGG--CUGa-----CAa-GCGUCCGC----AGCUGU- -5'
30515 5' -57.7 NC_006548.1 + 5584 0.7 0.270542
Target:  5'- gGGCCGGCUugcgcaacugGUUgGCGauGGCGUCGAg- -3'
miRNA:   3'- gCCGGCUGA----------CAAgCGU--CCGCAGCUgu -5'
30515 5' -57.7 NC_006548.1 + 21432 0.71 0.256998
Target:  5'- gCGGCCGGCggcagaGUcgcggcaaccgcUCGCcccuGGGCGUCGGCc -3'
miRNA:   3'- -GCCGGCUGa-----CA------------AGCG----UCCGCAGCUGu -5'
30515 5' -57.7 NC_006548.1 + 22312 0.73 0.172451
Target:  5'- aGGCCGAaggUGgugccgUUGCGGGUGUCGGCc -3'
miRNA:   3'- gCCGGCUg--ACa-----AGCGUCCGCAGCUGu -5'
30515 5' -57.7 NC_006548.1 + 12751 0.76 0.11655
Target:  5'- gCGGUgauucagCGGCUGUUCGCAGGCaGUCG-CGa -3'
miRNA:   3'- -GCCG-------GCUGACAAGCGUCCG-CAGCuGU- -5'
30515 5' -57.7 NC_006548.1 + 2146 0.89 0.012221
Target:  5'- aGGUCGACcaGUUCGCGGGCGUCGACGa -3'
miRNA:   3'- gCCGGCUGa-CAAGCGUCCGCAGCUGU- -5'
30515 5' -57.7 NC_006548.1 + 15614 1.08 0.000451
Target:  5'- gCGGCCGACUGUUCGCAGGCGUCGACAu -3'
miRNA:   3'- -GCCGGCUGACAAGCGUCCGCAGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.