miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30517 5' -53.8 NC_006548.1 + 21574 0.66 0.721307
Target:  5'- cUCCGACGA---GGUUCUGCcGCGCg -3'
miRNA:   3'- cGGGUUGCUaagCUAGGACGuCGCGg -5'
30517 5' -53.8 NC_006548.1 + 4631 0.66 0.721307
Target:  5'- aGCUCuACGAUcUCGAUCC-GCuGCaCCa -3'
miRNA:   3'- -CGGGuUGCUA-AGCUAGGaCGuCGcGG- -5'
30517 5' -53.8 NC_006548.1 + 36003 0.66 0.721307
Target:  5'- aGCuCCAgguGCGGcUCGAUCg-GC-GCGCCu -3'
miRNA:   3'- -CG-GGU---UGCUaAGCUAGgaCGuCGCGG- -5'
30517 5' -53.8 NC_006548.1 + 22960 0.66 0.710265
Target:  5'- gGCCuCAAgGAccgcUUC-AUCgUGCAGCGCg -3'
miRNA:   3'- -CGG-GUUgCU----AAGcUAGgACGUCGCGg -5'
30517 5' -53.8 NC_006548.1 + 7483 0.66 0.710265
Target:  5'- aCgCAACGAgUUCGAccugCCUGCAGaGCUu -3'
miRNA:   3'- cGgGUUGCU-AAGCUa---GGACGUCgCGG- -5'
30517 5' -53.8 NC_006548.1 + 34819 0.66 0.710265
Target:  5'- cCCCuuCGAUUUGAcugCCUGCAucCGCUc -3'
miRNA:   3'- cGGGuuGCUAAGCUa--GGACGUc-GCGG- -5'
30517 5' -53.8 NC_006548.1 + 15891 0.66 0.710265
Target:  5'- uGCUCGcCGAacUGGUCCUG-AGCGUCg -3'
miRNA:   3'- -CGGGUuGCUaaGCUAGGACgUCGCGG- -5'
30517 5' -53.8 NC_006548.1 + 12607 0.66 0.710265
Target:  5'- cGCUCGACGGaaUCGAaCCagGCcagcuggucGGCGCCg -3'
miRNA:   3'- -CGGGUUGCUa-AGCUaGGa-CG---------UCGCGG- -5'
30517 5' -53.8 NC_006548.1 + 20681 0.66 0.699142
Target:  5'- aGCUCGACGAgcgCGAgcaaCUGCuG-GCCa -3'
miRNA:   3'- -CGGGUUGCUaa-GCUag--GACGuCgCGG- -5'
30517 5' -53.8 NC_006548.1 + 14723 0.66 0.699142
Target:  5'- uGCUCAGCGAgcaGcgCCUgGCGcGCGCg -3'
miRNA:   3'- -CGGGUUGCUaagCuaGGA-CGU-CGCGg -5'
30517 5' -53.8 NC_006548.1 + 27193 0.66 0.687949
Target:  5'- uGCCgAGCGugcUCGcGUCCagcagGCGGCGaCCg -3'
miRNA:   3'- -CGGgUUGCua-AGC-UAGGa----CGUCGC-GG- -5'
30517 5' -53.8 NC_006548.1 + 29608 0.66 0.6767
Target:  5'- cGCCU-GCGGUggaaagCGcUCCUGCGGCGg- -3'
miRNA:   3'- -CGGGuUGCUAa-----GCuAGGACGUCGCgg -5'
30517 5' -53.8 NC_006548.1 + 9488 0.66 0.675572
Target:  5'- cGCCuggugaugCAACGGUUCGGUCCaccagcaggaggcUGCucugguGCGCg -3'
miRNA:   3'- -CGG--------GUUGCUAAGCUAGG-------------ACGu-----CGCGg -5'
30517 5' -53.8 NC_006548.1 + 15741 0.66 0.672187
Target:  5'- cGCCCAG-GAagCGAUCCUcuggcccugguucCAGCGCUg -3'
miRNA:   3'- -CGGGUUgCUaaGCUAGGAc------------GUCGCGG- -5'
30517 5' -53.8 NC_006548.1 + 28951 0.67 0.665405
Target:  5'- cGCCuCGACGGUUUGG-CCgGUGGC-CCg -3'
miRNA:   3'- -CGG-GUUGCUAAGCUaGGaCGUCGcGG- -5'
30517 5' -53.8 NC_006548.1 + 29103 0.67 0.665405
Target:  5'- aUCCGGuCGAcUUGGUCCUGgAGCuGCUg -3'
miRNA:   3'- cGGGUU-GCUaAGCUAGGACgUCG-CGG- -5'
30517 5' -53.8 NC_006548.1 + 19304 0.67 0.665405
Target:  5'- cGCUCGACGGccaccugCGcaaCCUGCuGCGCUa -3'
miRNA:   3'- -CGGGUUGCUaa-----GCua-GGACGuCGCGG- -5'
30517 5' -53.8 NC_006548.1 + 35839 0.67 0.658612
Target:  5'- cGUCgAGCGAUgugaugcugucuucgUCGAUCCcgaGCAGC-CCg -3'
miRNA:   3'- -CGGgUUGCUA---------------AGCUAGGa--CGUCGcGG- -5'
30517 5' -53.8 NC_006548.1 + 33138 0.67 0.631368
Target:  5'- uGUCCAucACGAggaacCGcgCCUGC-GCGCUg -3'
miRNA:   3'- -CGGGU--UGCUaa---GCuaGGACGuCGCGG- -5'
30517 5' -53.8 NC_006548.1 + 36990 0.68 0.608662
Target:  5'- uGCUCGcagACGAgucaaccagUUGAUcggCCUGCAGCaGCCg -3'
miRNA:   3'- -CGGGU---UGCUa--------AGCUA---GGACGUCG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.