miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30518 3' -59.7 NC_006548.1 + 30074 0.65 0.369403
Target:  5'- gGCGCCUGGAGUaaggcugGGCaggaaaacuucuGGCUGacacuaAGcCGCGa -3'
miRNA:   3'- -CGUGGACCUCG-------UCG------------UCGACg-----UC-GCGC- -5'
30518 3' -59.7 NC_006548.1 + 13642 0.66 0.361533
Target:  5'- -gAUCUGGuugAGCAGCAGCUuGCcgccgcccGCGCa -3'
miRNA:   3'- cgUGGACC---UCGUCGUCGA-CGu-------CGCGc -5'
30518 3' -59.7 NC_006548.1 + 23410 0.66 0.361533
Target:  5'- aCGCUUGGccAGUGGCAGaCUGUAGCcccgGCGc -3'
miRNA:   3'- cGUGGACC--UCGUCGUC-GACGUCG----CGC- -5'
30518 3' -59.7 NC_006548.1 + 20709 0.66 0.352927
Target:  5'- cGCuCCUGGAGC-GCAGCUucGuCAG-GCa -3'
miRNA:   3'- -CGuGGACCUCGuCGUCGA--C-GUCgCGc -5'
30518 3' -59.7 NC_006548.1 + 19589 0.66 0.344466
Target:  5'- aCACCauucuGCAGCGGguagagcgcuauCUGCAGCGCGc -3'
miRNA:   3'- cGUGGaccu-CGUCGUC------------GACGUCGCGC- -5'
30518 3' -59.7 NC_006548.1 + 13089 0.66 0.336152
Target:  5'- cGC-CCUGGuccaguacaAGCAGCAGgUcGC-GCGCGc -3'
miRNA:   3'- -CGuGGACC---------UCGUCGUCgA-CGuCGCGC- -5'
30518 3' -59.7 NC_006548.1 + 20142 0.66 0.336152
Target:  5'- cCACCUGGuGCGGCucggcauagAGCaUGCcgucGCGCa -3'
miRNA:   3'- cGUGGACCuCGUCG---------UCG-ACGu---CGCGc -5'
30518 3' -59.7 NC_006548.1 + 29591 0.66 0.336152
Target:  5'- gGCugCcauucagGGAGCcGCAGCcagucuUGCGGcCGCGa -3'
miRNA:   3'- -CGugGa------CCUCGuCGUCG------ACGUC-GCGC- -5'
30518 3' -59.7 NC_006548.1 + 27076 0.67 0.319967
Target:  5'- gGC-CCaGGAugcuGCGGCAGCcaguacGCAGCGCc -3'
miRNA:   3'- -CGuGGaCCU----CGUCGUCGa-----CGUCGCGc -5'
30518 3' -59.7 NC_006548.1 + 19110 0.67 0.312096
Target:  5'- aGCA-CUGGAcgugcucaacGCgGGCAGC-GCAGCGCu -3'
miRNA:   3'- -CGUgGACCU----------CG-UCGUCGaCGUCGCGc -5'
30518 3' -59.7 NC_006548.1 + 14682 0.67 0.312096
Target:  5'- -uGCCUGGAacuucuuCAGCGugacGCUGgAGCGCGu -3'
miRNA:   3'- cgUGGACCUc------GUCGU----CGACgUCGCGC- -5'
30518 3' -59.7 NC_006548.1 + 18476 0.67 0.304373
Target:  5'- aGCugCUGGuugaguuucGCAGCcgguucggguGGCaGCGGCGUGg -3'
miRNA:   3'- -CGugGACCu--------CGUCG----------UCGaCGUCGCGC- -5'
30518 3' -59.7 NC_006548.1 + 29091 0.67 0.304373
Target:  5'- uGguCCUGGAGCugcuGCAGCU-CAGCc-- -3'
miRNA:   3'- -CguGGACCUCGu---CGUCGAcGUCGcgc -5'
30518 3' -59.7 NC_006548.1 + 18729 0.67 0.304373
Target:  5'- aCGCCUuGGGCAGCc-CUGCGGCGg- -3'
miRNA:   3'- cGUGGAcCUCGUCGucGACGUCGCgc -5'
30518 3' -59.7 NC_006548.1 + 30719 0.67 0.303609
Target:  5'- gGCACC-GGGGCAuCAGCaGCcccuacgAGCGCa -3'
miRNA:   3'- -CGUGGaCCUCGUcGUCGaCG-------UCGCGc -5'
30518 3' -59.7 NC_006548.1 + 29685 0.67 0.296798
Target:  5'- aGCACCUGcGAGCccauucgcGGCcgcaagacuGGCUGCGGCu-- -3'
miRNA:   3'- -CGUGGAC-CUCG--------UCG---------UCGACGUCGcgc -5'
30518 3' -59.7 NC_006548.1 + 23823 0.67 0.296798
Target:  5'- --uCCUGGgccAGCAGCacauaGGCUGCuGGCGUGc -3'
miRNA:   3'- cguGGACC---UCGUCG-----UCGACG-UCGCGC- -5'
30518 3' -59.7 NC_006548.1 + 20857 0.67 0.296798
Target:  5'- aGCcuUCUGGcGCGGCAGCagGCGGC-CGg -3'
miRNA:   3'- -CGu-GGACCuCGUCGUCGa-CGUCGcGC- -5'
30518 3' -59.7 NC_006548.1 + 12152 0.67 0.28937
Target:  5'- cCGCC-GGccAGCAGCAGgaGCaucAGCGCa -3'
miRNA:   3'- cGUGGaCC--UCGUCGUCgaCG---UCGCGc -5'
30518 3' -59.7 NC_006548.1 + 26404 0.67 0.288635
Target:  5'- uGCGCCUGGAagaaacacugucgGCGGCucacCUGCGGCugaGCa -3'
miRNA:   3'- -CGUGGACCU-------------CGUCGuc--GACGUCG---CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.