Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30518 | 3' | -59.7 | NC_006548.1 | + | 30074 | 0.65 | 0.369403 |
Target: 5'- gGCGCCUGGAGUaaggcugGGCaggaaaacuucuGGCUGacacuaAGcCGCGa -3' miRNA: 3'- -CGUGGACCUCG-------UCG------------UCGACg-----UC-GCGC- -5' |
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30518 | 3' | -59.7 | NC_006548.1 | + | 23410 | 0.66 | 0.361533 |
Target: 5'- aCGCUUGGccAGUGGCAGaCUGUAGCcccgGCGc -3' miRNA: 3'- cGUGGACC--UCGUCGUC-GACGUCG----CGC- -5' |
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30518 | 3' | -59.7 | NC_006548.1 | + | 13642 | 0.66 | 0.361533 |
Target: 5'- -gAUCUGGuugAGCAGCAGCUuGCcgccgcccGCGCa -3' miRNA: 3'- cgUGGACC---UCGUCGUCGA-CGu-------CGCGc -5' |
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30518 | 3' | -59.7 | NC_006548.1 | + | 20709 | 0.66 | 0.352927 |
Target: 5'- cGCuCCUGGAGC-GCAGCUucGuCAG-GCa -3' miRNA: 3'- -CGuGGACCUCGuCGUCGA--C-GUCgCGc -5' |
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30518 | 3' | -59.7 | NC_006548.1 | + | 19589 | 0.66 | 0.344466 |
Target: 5'- aCACCauucuGCAGCGGguagagcgcuauCUGCAGCGCGc -3' miRNA: 3'- cGUGGaccu-CGUCGUC------------GACGUCGCGC- -5' |
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30518 | 3' | -59.7 | NC_006548.1 | + | 20142 | 0.66 | 0.336152 |
Target: 5'- cCACCUGGuGCGGCucggcauagAGCaUGCcgucGCGCa -3' miRNA: 3'- cGUGGACCuCGUCG---------UCG-ACGu---CGCGc -5' |
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30518 | 3' | -59.7 | NC_006548.1 | + | 13089 | 0.66 | 0.336152 |
Target: 5'- cGC-CCUGGuccaguacaAGCAGCAGgUcGC-GCGCGc -3' miRNA: 3'- -CGuGGACC---------UCGUCGUCgA-CGuCGCGC- -5' |
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30518 | 3' | -59.7 | NC_006548.1 | + | 29591 | 0.66 | 0.336152 |
Target: 5'- gGCugCcauucagGGAGCcGCAGCcagucuUGCGGcCGCGa -3' miRNA: 3'- -CGugGa------CCUCGuCGUCG------ACGUC-GCGC- -5' |
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30518 | 3' | -59.7 | NC_006548.1 | + | 27076 | 0.67 | 0.319967 |
Target: 5'- gGC-CCaGGAugcuGCGGCAGCcaguacGCAGCGCc -3' miRNA: 3'- -CGuGGaCCU----CGUCGUCGa-----CGUCGCGc -5' |
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30518 | 3' | -59.7 | NC_006548.1 | + | 14682 | 0.67 | 0.312096 |
Target: 5'- -uGCCUGGAacuucuuCAGCGugacGCUGgAGCGCGu -3' miRNA: 3'- cgUGGACCUc------GUCGU----CGACgUCGCGC- -5' |
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30518 | 3' | -59.7 | NC_006548.1 | + | 19110 | 0.67 | 0.312096 |
Target: 5'- aGCA-CUGGAcgugcucaacGCgGGCAGC-GCAGCGCu -3' miRNA: 3'- -CGUgGACCU----------CG-UCGUCGaCGUCGCGc -5' |
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30518 | 3' | -59.7 | NC_006548.1 | + | 18729 | 0.67 | 0.304373 |
Target: 5'- aCGCCUuGGGCAGCc-CUGCGGCGg- -3' miRNA: 3'- cGUGGAcCUCGUCGucGACGUCGCgc -5' |
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30518 | 3' | -59.7 | NC_006548.1 | + | 29091 | 0.67 | 0.304373 |
Target: 5'- uGguCCUGGAGCugcuGCAGCU-CAGCc-- -3' miRNA: 3'- -CguGGACCUCGu---CGUCGAcGUCGcgc -5' |
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30518 | 3' | -59.7 | NC_006548.1 | + | 18476 | 0.67 | 0.304373 |
Target: 5'- aGCugCUGGuugaguuucGCAGCcgguucggguGGCaGCGGCGUGg -3' miRNA: 3'- -CGugGACCu--------CGUCG----------UCGaCGUCGCGC- -5' |
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30518 | 3' | -59.7 | NC_006548.1 | + | 30719 | 0.67 | 0.303609 |
Target: 5'- gGCACC-GGGGCAuCAGCaGCcccuacgAGCGCa -3' miRNA: 3'- -CGUGGaCCUCGUcGUCGaCG-------UCGCGc -5' |
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30518 | 3' | -59.7 | NC_006548.1 | + | 20857 | 0.67 | 0.296798 |
Target: 5'- aGCcuUCUGGcGCGGCAGCagGCGGC-CGg -3' miRNA: 3'- -CGu-GGACCuCGUCGUCGa-CGUCGcGC- -5' |
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30518 | 3' | -59.7 | NC_006548.1 | + | 23823 | 0.67 | 0.296798 |
Target: 5'- --uCCUGGgccAGCAGCacauaGGCUGCuGGCGUGc -3' miRNA: 3'- cguGGACC---UCGUCG-----UCGACG-UCGCGC- -5' |
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30518 | 3' | -59.7 | NC_006548.1 | + | 29685 | 0.67 | 0.296798 |
Target: 5'- aGCACCUGcGAGCccauucgcGGCcgcaagacuGGCUGCGGCu-- -3' miRNA: 3'- -CGUGGAC-CUCG--------UCG---------UCGACGUCGcgc -5' |
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30518 | 3' | -59.7 | NC_006548.1 | + | 12152 | 0.67 | 0.28937 |
Target: 5'- cCGCC-GGccAGCAGCAGgaGCaucAGCGCa -3' miRNA: 3'- cGUGGaCC--UCGUCGUCgaCG---UCGCGc -5' |
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30518 | 3' | -59.7 | NC_006548.1 | + | 26404 | 0.67 | 0.288635 |
Target: 5'- uGCGCCUGGAagaaacacugucgGCGGCucacCUGCGGCugaGCa -3' miRNA: 3'- -CGUGGACCU-------------CGUCGuc--GACGUCG---CGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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