miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30518 5' -52.4 NC_006548.1 + 18770 0.66 0.802869
Target:  5'- gGCGaggaUCugCGGCAGGGUcGCUaGcUCGGc -3'
miRNA:   3'- gCGC----AGugGUCGUUCUA-CGA-CaAGCC- -5'
30518 5' -52.4 NC_006548.1 + 36294 0.66 0.802869
Target:  5'- gCGgGUCGCaauaacccGCGGGGUGCgg-UCGGg -3'
miRNA:   3'- -GCgCAGUGgu------CGUUCUACGacaAGCC- -5'
30518 5' -52.4 NC_006548.1 + 33446 0.66 0.771038
Target:  5'- uGUGUCgACCAGCAccaggucGGcgGCaUGggUCGGa -3'
miRNA:   3'- gCGCAG-UGGUCGU-------UCuaCG-ACa-AGCC- -5'
30518 5' -52.4 NC_006548.1 + 10286 0.66 0.761501
Target:  5'- gCGCGguagaccuCCAGCAAGA-GCUGcUCGu -3'
miRNA:   3'- -GCGCagu-----GGUCGUUCUaCGACaAGCc -5'
30518 5' -52.4 NC_006548.1 + 12915 0.66 0.755076
Target:  5'- uGCG-CACCAGCAcguucuGGcucgcgcugagcgcgGUGCUGUgCGGc -3'
miRNA:   3'- gCGCaGUGGUCGU------UC---------------UACGACAaGCC- -5'
30518 5' -52.4 NC_006548.1 + 9507 0.67 0.706646
Target:  5'- uCG-GUcCACCAGCAGGAgGCUGcUCuGGu -3'
miRNA:   3'- -GCgCA-GUGGUCGUUCUaCGACaAG-CC- -5'
30518 5' -52.4 NC_006548.1 + 25651 0.68 0.672678
Target:  5'- uCGCGUUucuucaACUGGCGAc--GCUGUUCGGc -3'
miRNA:   3'- -GCGCAG------UGGUCGUUcuaCGACAAGCC- -5'
30518 5' -52.4 NC_006548.1 + 13427 0.69 0.625711
Target:  5'- gGCGUCagaACCGGCGgcgggccAGGUcGCUGUUUGa -3'
miRNA:   3'- gCGCAG---UGGUCGU-------UCUA-CGACAAGCc -5'
30518 5' -52.4 NC_006548.1 + 37778 0.69 0.615388
Target:  5'- aCGCcgGUCGCCGGCAcuguGAUGagcgUGUUCGa -3'
miRNA:   3'- -GCG--CAGUGGUCGUu---CUACg---ACAAGCc -5'
30518 5' -52.4 NC_006548.1 + 37856 0.69 0.592505
Target:  5'- gGCaUCGCCAGCcgcagauugcAGAUGCcaggGUUCGGu -3'
miRNA:   3'- gCGcAGUGGUCGu---------UCUACGa---CAAGCC- -5'
30518 5' -52.4 NC_006548.1 + 24744 0.7 0.525022
Target:  5'- -aCGUCACCGGCAAGAcccaGCcGUUCa- -3'
miRNA:   3'- gcGCAGUGGUCGUUCUa---CGaCAAGcc -5'
30518 5' -52.4 NC_006548.1 + 19331 0.73 0.400712
Target:  5'- uGCGcUACCAGCuGGAcggcagcgagcUGCUGUUUGGu -3'
miRNA:   3'- gCGCaGUGGUCGuUCU-----------ACGACAAGCC- -5'
30518 5' -52.4 NC_006548.1 + 20588 0.73 0.372662
Target:  5'- cCGCGUCAgCGGC-AGAgGCUGacCGGa -3'
miRNA:   3'- -GCGCAGUgGUCGuUCUaCGACaaGCC- -5'
30518 5' -52.4 NC_006548.1 + 22007 0.74 0.32069
Target:  5'- gGUGaUCACCGGCAgcGGGUuGCUGgUCGGa -3'
miRNA:   3'- gCGC-AGUGGUCGU--UCUA-CGACaAGCC- -5'
30518 5' -52.4 NC_006548.1 + 13726 0.76 0.267157
Target:  5'- gGCGUCcaGCCGGUAGGAgaGCUGUUCa- -3'
miRNA:   3'- gCGCAG--UGGUCGUUCUa-CGACAAGcc -5'
30518 5' -52.4 NC_006548.1 + 16528 1.11 0.00103
Target:  5'- cCGCGUCACCAGCAAGAUGCUGUUCGGc -3'
miRNA:   3'- -GCGCAGUGGUCGUUCUACGACAAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.