miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30519 3' -54.2 NC_006548.1 + 12265 0.66 0.6747
Target:  5'- ---uGAuGcCCGCucgcCCGUCGGCGCa -3'
miRNA:   3'- cuagUUuCaGGCGuu--GGCAGCCGCGa -5'
30519 3' -54.2 NC_006548.1 + 32418 0.66 0.663341
Target:  5'- cGUCGccG-CCGUuGCCGUucgCGGCGCUg -3'
miRNA:   3'- cUAGUuuCaGGCGuUGGCA---GCCGCGA- -5'
30519 3' -54.2 NC_006548.1 + 16172 0.66 0.663341
Target:  5'- aAUCAucGUgCCGCAcgGCU-UCGGCGCg -3'
miRNA:   3'- cUAGUuuCA-GGCGU--UGGcAGCCGCGa -5'
30519 3' -54.2 NC_006548.1 + 6145 0.66 0.651951
Target:  5'- uGAUCAc---CCGCAACCccUGGCGCg -3'
miRNA:   3'- -CUAGUuucaGGCGUUGGcaGCCGCGa -5'
30519 3' -54.2 NC_006548.1 + 26978 0.67 0.606309
Target:  5'- uGAUCGAGGgCgGCuuuACCcugcugcaaGUCGGCGCg -3'
miRNA:   3'- -CUAGUUUCaGgCGu--UGG---------CAGCCGCGa -5'
30519 3' -54.2 NC_006548.1 + 11672 0.68 0.51675
Target:  5'- uGUCAucG-CCGCAACCc-CGGCGCc -3'
miRNA:   3'- cUAGUuuCaGGCGUUGGcaGCCGCGa -5'
30519 3' -54.2 NC_006548.1 + 20385 0.68 0.51675
Target:  5'- cGGUCAGAG-CCGUcACCGcguagGGCGCUu -3'
miRNA:   3'- -CUAGUUUCaGGCGuUGGCag---CCGCGA- -5'
30519 3' -54.2 NC_006548.1 + 17912 0.71 0.384776
Target:  5'- uGAUCGAuaauggcuugcAGaUCCGCcACCagGUCGGCGCg -3'
miRNA:   3'- -CUAGUU-----------UC-AGGCGuUGG--CAGCCGCGa -5'
30519 3' -54.2 NC_006548.1 + 36582 0.74 0.229809
Target:  5'- cGAUCAAcG-CCGCGGCCGgcaccgCGGUGCUc -3'
miRNA:   3'- -CUAGUUuCaGGCGUUGGCa-----GCCGCGA- -5'
30519 3' -54.2 NC_006548.1 + 21320 0.78 0.138731
Target:  5'- cGUCGAAGaCCGC-ACCGUCGGCGg- -3'
miRNA:   3'- cUAGUUUCaGGCGuUGGCAGCCGCga -5'
30519 3' -54.2 NC_006548.1 + 16623 1.07 0.001009
Target:  5'- cGAUCAAAGUCCGCAACCGUCGGCGCUu -3'
miRNA:   3'- -CUAGUUUCAGGCGUUGGCAGCCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.