miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30519 5' -62.7 NC_006548.1 + 34423 0.66 0.27473
Target:  5'- aCCAGG-CGGuuGCCcguguguugcucgaUGcCGCgCUGCUCAa -3'
miRNA:   3'- -GGUCCuGCCgcCGG--------------AC-GCG-GACGAGU- -5'
30519 5' -62.7 NC_006548.1 + 24258 0.66 0.269981
Target:  5'- cCCAGGAC-GCGGCCacCGCC-GC-CAa -3'
miRNA:   3'- -GGUCCUGcCGCCGGacGCGGaCGaGU- -5'
30519 5' -62.7 NC_006548.1 + 5576 0.66 0.269981
Target:  5'- gCCAGGcCGGgcCGGCUUGCGCaaCUGgUUg -3'
miRNA:   3'- -GGUCCuGCC--GCCGGACGCG--GACgAGu -5'
30519 5' -62.7 NC_006548.1 + 29818 0.66 0.267965
Target:  5'- uCCGGG-CGGCGGCCgcaacccaGCCgggcaugaccccgcUGCUCc -3'
miRNA:   3'- -GGUCCuGCCGCCGGacg-----CGG--------------ACGAGu -5'
30519 5' -62.7 NC_006548.1 + 25125 0.66 0.265962
Target:  5'- gCCGGGGCGGgcugGGuCUUGCGCUcaaccuugcgccccaUGCUUAg -3'
miRNA:   3'- -GGUCCUGCCg---CC-GGACGCGG---------------ACGAGU- -5'
30519 5' -62.7 NC_006548.1 + 21700 0.66 0.256775
Target:  5'- uCCGGGACGGUGaagcCCUGgGCgaGgUCGu -3'
miRNA:   3'- -GGUCCUGCCGCc---GGACgCGgaCgAGU- -5'
30519 5' -62.7 NC_006548.1 + 23549 0.67 0.237964
Target:  5'- gCCAGG-CGGUGGgguuCCgcagguacugGCGCCcGCUCGc -3'
miRNA:   3'- -GGUCCuGCCGCC----GGa---------CGCGGaCGAGU- -5'
30519 5' -62.7 NC_006548.1 + 36810 0.67 0.237964
Target:  5'- gCCAGG-C-GCGGCCuuaUGCGCCUGg--- -3'
miRNA:   3'- -GGUCCuGcCGCCGG---ACGCGGACgagu -5'
30519 5' -62.7 NC_006548.1 + 2431 0.67 0.231361
Target:  5'- --cGGAUGGaaaaccgcCGGCCuggcgggUGCGCCUcGCUCAa -3'
miRNA:   3'- gguCCUGCC--------GCCGG-------ACGCGGA-CGAGU- -5'
30519 5' -62.7 NC_006548.1 + 28152 0.67 0.231361
Target:  5'- gCAGG-CGGUugaguucGGCCUGCaggccgccagccGCCUGCUg- -3'
miRNA:   3'- gGUCCuGCCG-------CCGGACG------------CGGACGAgu -5'
30519 5' -62.7 NC_006548.1 + 36349 0.67 0.226074
Target:  5'- gCUGGGcauGCGGCcguccGGCCUGCagaugaacuacGCgCUGCUCAg -3'
miRNA:   3'- -GGUCC---UGCCG-----CCGGACG-----------CG-GACGAGU- -5'
30519 5' -62.7 NC_006548.1 + 31658 0.67 0.22032
Target:  5'- gCCuGGAUGGCGGCCccuCGCCcgagugGCUg- -3'
miRNA:   3'- -GGuCCUGCCGCCGGac-GCGGa-----CGAgu -5'
30519 5' -62.7 NC_006548.1 + 15044 0.67 0.22032
Target:  5'- -aAGGAacaGGCGcGCCUGCaggucaucacGgCUGCUCAc -3'
miRNA:   3'- ggUCCUg--CCGC-CGGACG----------CgGACGAGU- -5'
30519 5' -62.7 NC_006548.1 + 26099 0.67 0.216928
Target:  5'- -uGGGGCGGCacuguucuuccuacGGCCgGUGCCggcggauguggaagUGCUCAa -3'
miRNA:   3'- ggUCCUGCCG--------------CCGGaCGCGG--------------ACGAGU- -5'
30519 5' -62.7 NC_006548.1 + 20885 0.67 0.214691
Target:  5'- gCCAGGucacaaagcCGGCGGCCgagGUGCUgcgcaGCUUg -3'
miRNA:   3'- -GGUCCu--------GCCGCCGGa--CGCGGa----CGAGu -5'
30519 5' -62.7 NC_006548.1 + 24161 0.67 0.214691
Target:  5'- gCCGGGAUGGCGGCgUcuuguuucuugGCGggggUGCUCAu -3'
miRNA:   3'- -GGUCCUGCCGCCGgA-----------CGCgg--ACGAGU- -5'
30519 5' -62.7 NC_006548.1 + 580 0.68 0.193399
Target:  5'- uCCAGGcCGGCcGCCUGUuCUggaUGCUCGa -3'
miRNA:   3'- -GGUCCuGCCGcCGGACGcGG---ACGAGU- -5'
30519 5' -62.7 NC_006548.1 + 33038 0.68 0.188372
Target:  5'- gCGGGAgcCGGcCGGCCaGCGCC-GCUgCAc -3'
miRNA:   3'- gGUCCU--GCC-GCCGGaCGCGGaCGA-GU- -5'
30519 5' -62.7 NC_006548.1 + 20964 0.69 0.173516
Target:  5'- uCCGGcGACGGCGGCgacCUGaGCUucggcagUGCUCAc -3'
miRNA:   3'- -GGUC-CUGCCGCCG---GACgCGG-------ACGAGU- -5'
30519 5' -62.7 NC_006548.1 + 35275 0.69 0.169403
Target:  5'- --uGGugGGCGGCCUGguaCCUGCg-- -3'
miRNA:   3'- gguCCugCCGCCGGACgc-GGACGagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.